Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20170

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20150 and AO353_20155 are separated by 32 nucleotidesAO353_20155 and AO353_20160 are separated by 58 nucleotidesAO353_20160 and AO353_20165 are separated by 77 nucleotidesAO353_20165 and AO353_20170 are separated by 400 nucleotidesAO353_20170 and AO353_20175 are separated by 92 nucleotidesAO353_20175 and AO353_20180 are separated by 106 nucleotides AO353_20150: AO353_20150 - tRNA-Arg, at 4,431,435 to 4,431,511 _20150 AO353_20155: AO353_20155 - tRNA-His, at 4,431,544 to 4,431,619 _20155 AO353_20160: AO353_20160 - tRNA-Leu, at 4,431,678 to 4,431,762 _20160 AO353_20165: AO353_20165 - tRNA-His, at 4,431,840 to 4,431,915 _20165 AO353_20170: AO353_20170 - trigger factor, at 4,432,316 to 4,433,626 _20170 AO353_20175: AO353_20175 - ATP-dependent Clp protease proteolytic subunit, at 4,433,719 to 4,434,360 _20175 AO353_20180: AO353_20180 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 4,434,467 to 4,435,750 _20180 Position (kb) 4432 4433 4434Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4431.620 kb on + strandat 4431.620 kb on + strandat 4431.663 kb on + strandat 4431.663 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.766 kb on - strandat 4431.830 kb on - strandat 4431.837 kb on - strandat 4431.837 kb on - strandat 4431.837 kb on - strandat 4431.848 kb on - strand, within AO353_20165at 4431.916 kb on + strandat 4431.916 kb on + strandat 4431.965 kb on + strandat 4431.966 kb on - strandat 4431.966 kb on - strandat 4431.966 kb on - strandat 4431.971 kb on + strandat 4431.971 kb on + strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4432.021 kb on + strandat 4432.021 kb on + strandat 4432.021 kb on + strandat 4432.022 kb on - strandat 4432.022 kb on - strandat 4432.022 kb on - strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.169 kb on + strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.170 kb on - strandat 4432.190 kb on - strandat 4432.223 kb on - strandat 4432.223 kb on - strandat 4432.249 kb on + strandat 4432.250 kb on - strandat 4432.250 kb on - strandat 4432.250 kb on - strandat 4432.250 kb on - strandat 4432.311 kb on + strandat 4432.337 kb on - strandat 4432.337 kb on - strandat 4432.487 kb on + strand, within AO353_20170at 4432.541 kb on + strand, within AO353_20170at 4432.541 kb on + strand, within AO353_20170at 4432.976 kb on + strand, within AO353_20170at 4432.977 kb on - strand, within AO353_20170at 4432.977 kb on - strand, within AO353_20170at 4432.977 kb on - strand, within AO353_20170at 4432.977 kb on - strand, within AO353_20170at 4433.086 kb on + strand, within AO353_20170at 4433.185 kb on - strand, within AO353_20170at 4433.185 kb on - strand, within AO353_20170at 4433.384 kb on + strand, within AO353_20170at 4433.477 kb on + strand, within AO353_20170at 4433.477 kb on + strand, within AO353_20170at 4433.477 kb on + strand, within AO353_20170at 4433.477 kb on + strand, within AO353_20170at 4433.477 kb on + strand, within AO353_20170at 4433.582 kb on + strandat 4433.582 kb on + strandat 4433.654 kb on + strandat 4433.654 kb on + strandat 4433.654 kb on + strandat 4433.655 kb on - strandat 4433.655 kb on - strandat 4433.693 kb on + strandat 4433.693 kb on + strandat 4433.693 kb on + strandat 4433.693 kb on + strandat 4433.697 kb on + strandat 4433.697 kb on + strandat 4433.697 kb on + strandat 4433.697 kb on + strandat 4433.697 kb on + strandat 4433.698 kb on - strandat 4433.698 kb on - strandat 4433.698 kb on - strandat 4433.734 kb on + strandat 4433.735 kb on - strandat 4433.735 kb on - strandat 4433.735 kb on - strandat 4433.819 kb on - strand, within AO353_20175at 4433.827 kb on + strand, within AO353_20175at 4433.881 kb on + strand, within AO353_20175at 4433.882 kb on - strand, within AO353_20175at 4433.953 kb on + strand, within AO353_20175at 4434.036 kb on + strand, within AO353_20175at 4434.037 kb on - strand, within AO353_20175at 4434.061 kb on - strand, within AO353_20175at 4434.345 kb on + strandat 4434.346 kb on - strandat 4434.346 kb on - strandat 4434.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,431,620 + -1.1
4,431,620 + +0.5
4,431,663 + -0.5
4,431,663 + +0.4
4,431,666 + -0.4
4,431,666 + -0.8
4,431,666 + +0.5
4,431,666 + -1.1
4,431,666 + +0.1
4,431,666 + +0.3
4,431,666 + -1.7
4,431,666 + -0.7
4,431,666 + +0.5
4,431,765 + -0.4
4,431,765 + +0.1
4,431,765 + +0.1
4,431,765 + +0.1
4,431,766 - +0.1
4,431,830 - +1.5
4,431,837 - +0.1
4,431,837 - +0.6
4,431,837 - +2.1
4,431,848 - AO353_20165 0.11 -0.7
4,431,916 + -0.5
4,431,916 + +0.4
4,431,965 + +0.1
4,431,966 - -0.6
4,431,966 - -1.8
4,431,966 - -1.3
4,431,971 + -0.9
4,431,971 + -0.5
4,431,972 - -0.8
4,431,972 - -0.9
4,431,972 - +0.3
4,431,972 - +0.8
4,432,021 + -0.7
4,432,021 + +0.1
4,432,021 + +0.5
4,432,022 - -0.1
4,432,022 - +0.3
4,432,022 - -0.5
4,432,104 + -0.6
4,432,104 + +1.1
4,432,104 + -0.9
4,432,104 + +0.4
4,432,104 + +1.3
4,432,104 + -0.8
4,432,104 + +0.3
4,432,104 + +0.6
4,432,104 + -0.5
4,432,104 + +0.1
4,432,104 + +0.8
4,432,104 + -1.0
4,432,104 + +1.2
4,432,104 + -0.1
4,432,104 + -0.6
4,432,104 + -1.3
4,432,104 + +0.2
4,432,104 + +0.1
4,432,104 + -0.5
4,432,104 + -1.4
4,432,104 + +1.1
4,432,104 + -0.3
4,432,104 + +0.1
4,432,105 - -1.2
4,432,105 - +0.1
4,432,105 - -0.0
4,432,105 - +0.1
4,432,105 - +0.8
4,432,105 - -1.1
4,432,105 - -0.5
4,432,105 - -0.7
4,432,105 - -1.1
4,432,105 - +2.1
4,432,105 - -0.1
4,432,105 - -1.5
4,432,105 - +0.3
4,432,105 - -0.9
4,432,105 - -1.2
4,432,105 - +0.1
4,432,105 - -0.3
4,432,105 - -1.5
4,432,105 - -0.1
4,432,105 - -0.5
4,432,106 + +0.7
4,432,106 + +0.5
4,432,106 + -0.7
4,432,106 + +0.4
4,432,106 + -0.5
4,432,106 + -0.7
4,432,106 + +0.1
4,432,106 + -0.0
4,432,106 + +0.1
4,432,106 + -0.7
4,432,106 + -0.7
4,432,106 + +0.3
4,432,106 + +1.1
4,432,106 + +1.1
4,432,106 + +0.1
4,432,106 + -0.3
4,432,106 + +0.5
4,432,106 + +0.3
4,432,106 + +0.6
4,432,106 + +0.5
4,432,106 + -0.3
4,432,106 + -0.5
4,432,106 + -0.5
4,432,106 + -0.5
4,432,106 + +0.3
4,432,107 - +1.6
4,432,107 - -0.7
4,432,107 - +0.2
4,432,107 - +1.1
4,432,107 - -0.9
4,432,107 - +3.1
4,432,107 - -1.6
4,432,107 - +0.1
4,432,107 - -0.1
4,432,107 - +1.1
4,432,107 - +0.3
4,432,107 - +0.2
4,432,108 + -0.5
4,432,108 + +0.1
4,432,108 + -0.1
4,432,108 + +1.0
4,432,108 + -0.5
4,432,108 + +0.8
4,432,108 + +0.7
4,432,108 + -0.4
4,432,108 + +1.5
4,432,108 + -0.9
4,432,108 + +0.2
4,432,108 + +0.7
4,432,108 + +0.4
4,432,108 + +0.6
4,432,108 + +0.5
4,432,108 + -0.9
4,432,108 + +0.6
4,432,108 + +1.6
4,432,108 + -1.3
4,432,108 + -0.4
4,432,108 + -0.1
4,432,108 + +0.5
4,432,108 + +2.1
4,432,108 + -0.2
4,432,109 - +0.5
4,432,109 - -1.3
4,432,109 - +0.2
4,432,109 - -0.8
4,432,109 - +0.4
4,432,109 - +1.1
4,432,109 - -0.4
4,432,109 - -0.9
4,432,109 - -2.1
4,432,109 - +0.9
4,432,109 - +0.5
4,432,109 - -1.5
4,432,109 - -0.5
4,432,109 - +0.6
4,432,109 - -0.9
4,432,109 - +0.3
4,432,109 - -0.7
4,432,109 - -0.7
4,432,109 - +1.1
4,432,109 - +0.3
4,432,109 - -0.3
4,432,109 - -0.5
4,432,109 - -1.5
4,432,109 - -0.1
4,432,109 - -1.3
4,432,109 - -0.4
4,432,109 - -0.2
4,432,109 - +0.3
4,432,110 + -0.9
4,432,110 + -0.7
4,432,110 + +0.4
4,432,110 + +1.0
4,432,110 + -1.0
4,432,110 + -1.1
4,432,110 + -0.4
4,432,110 + +0.7
4,432,110 + -0.9
4,432,110 + -0.8
4,432,110 + -1.7
4,432,111 - +0.1
4,432,111 - -0.9
4,432,111 - -0.2
4,432,111 - -1.3
4,432,111 - +0.1
4,432,111 - +0.1
4,432,111 - -0.5
4,432,111 - -1.9
4,432,111 - -0.4
4,432,111 - +0.8
4,432,147 + +0.3
4,432,147 + +0.5
4,432,147 + +1.0
4,432,147 + -0.8
4,432,147 + -1.0
4,432,148 - -0.9
4,432,148 - +1.1
4,432,148 - -0.7
4,432,148 - -0.7
4,432,148 - -1.3
4,432,148 - -0.1
4,432,148 - -0.6
4,432,148 - +0.3
4,432,148 - +0.7
4,432,148 - +0.3
4,432,169 + +0.2
4,432,169 + +0.2
4,432,169 + +0.3
4,432,169 + +1.3
4,432,169 + +1.1
4,432,169 + +0.2
4,432,169 + -2.3
4,432,169 + +0.9
4,432,170 - -0.4
4,432,170 - -1.8
4,432,170 - +0.6
4,432,170 - -1.7
4,432,170 - -0.3
4,432,170 - -2.1
4,432,170 - +0.1
4,432,170 - +0.4
4,432,170 - +1.8
4,432,190 - +0.1
4,432,223 - -1.3
4,432,223 - -0.7
4,432,249 + -0.9
4,432,250 - +1.1
4,432,250 - -2.5
4,432,250 - -0.7
4,432,250 - -1.7
4,432,311 + -0.9
4,432,337 - -0.1
4,432,337 - -1.7
4,432,487 + AO353_20170 0.13 -2.4
4,432,541 + AO353_20170 0.17 -0.4
4,432,541 + AO353_20170 0.17 -0.5
4,432,976 + AO353_20170 0.50 -1.9
4,432,977 - AO353_20170 0.50 -0.9
4,432,977 - AO353_20170 0.50 -1.3
4,432,977 - AO353_20170 0.50 +0.3
4,432,977 - AO353_20170 0.50 +0.3
4,433,086 + AO353_20170 0.59 +0.7
4,433,185 - AO353_20170 0.66 -1.5
4,433,185 - AO353_20170 0.66 -1.3
4,433,384 + AO353_20170 0.81 +0.5
4,433,477 + AO353_20170 0.89 +0.1
4,433,477 + AO353_20170 0.89 +1.1
4,433,477 + AO353_20170 0.89 -1.3
4,433,477 + AO353_20170 0.89 -0.9
4,433,477 + AO353_20170 0.89 -0.9
4,433,582 + -0.9
4,433,582 + +0.3
4,433,654 + +2.6
4,433,654 + +1.1
4,433,654 + -0.2
4,433,655 - -0.7
4,433,655 - +1.5
4,433,693 + +0.1
4,433,693 + +0.3
4,433,693 + -1.1
4,433,693 + -1.5
4,433,697 + -0.1
4,433,697 + +0.8
4,433,697 + -1.8
4,433,697 + +0.6
4,433,697 + +0.3
4,433,698 - -2.6
4,433,698 - -1.3
4,433,698 - -2.3
4,433,734 + -0.5
4,433,735 - -0.5
4,433,735 - -1.3
4,433,735 - -2.6
4,433,819 - AO353_20175 0.16 -1.3
4,433,827 + AO353_20175 0.17 -1.5
4,433,881 + AO353_20175 0.25 -1.7
4,433,882 - AO353_20175 0.25 -1.4
4,433,953 + AO353_20175 0.36 -1.9
4,434,036 + AO353_20175 0.49 -1.7
4,434,037 - AO353_20175 0.50 -0.5
4,434,061 - AO353_20175 0.53 -1.3
4,434,345 + +0.6
4,434,346 - -1.7
4,434,346 - -2.5
4,434,346 - -2.1

Or see this region's nucleotide sequence