Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07705

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07700 and AO353_07705 overlap by 1 nucleotidesAO353_07705 and AO353_07710 are separated by 210 nucleotides AO353_07700: AO353_07700 - electron transfer flavoprotein subunit alpha, at 1,695,610 to 1,696,830 _07700 AO353_07705: AO353_07705 - DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data), at 1,696,830 to 1,698,779 _07705 AO353_07710: AO353_07710 - DgcA Dimethylglycine demethylase subunit A (from data), at 1,698,990 to 1,701,050 _07710 Position (kb) 1696 1697 1698 1699Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1696.562 kb on + strand, within AO353_07700at 1696.562 kb on + strand, within AO353_07700at 1696.562 kb on + strand, within AO353_07700at 1696.562 kb on + strand, within AO353_07700at 1696.562 kb on + strand, within AO353_07700at 1696.562 kb on + strand, within AO353_07700at 1696.563 kb on - strand, within AO353_07700at 1696.563 kb on - strand, within AO353_07700at 1696.563 kb on - strand, within AO353_07700at 1696.819 kb on - strandat 1697.154 kb on + strand, within AO353_07705at 1697.154 kb on + strand, within AO353_07705at 1697.173 kb on + strand, within AO353_07705at 1697.174 kb on - strand, within AO353_07705at 1697.185 kb on + strand, within AO353_07705at 1697.185 kb on + strand, within AO353_07705at 1697.186 kb on - strand, within AO353_07705at 1697.197 kb on + strand, within AO353_07705at 1697.198 kb on - strand, within AO353_07705at 1697.198 kb on - strand, within AO353_07705at 1697.212 kb on + strand, within AO353_07705at 1697.212 kb on + strand, within AO353_07705at 1697.212 kb on + strand, within AO353_07705at 1697.213 kb on - strand, within AO353_07705at 1697.213 kb on - strand, within AO353_07705at 1697.213 kb on - strand, within AO353_07705at 1697.213 kb on - strand, within AO353_07705at 1697.213 kb on - strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.278 kb on + strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.279 kb on - strand, within AO353_07705at 1697.302 kb on + strand, within AO353_07705at 1697.302 kb on + strand, within AO353_07705at 1697.302 kb on + strand, within AO353_07705at 1697.302 kb on + strand, within AO353_07705at 1697.303 kb on - strand, within AO353_07705at 1697.303 kb on - strand, within AO353_07705at 1697.303 kb on - strand, within AO353_07705at 1697.323 kb on + strand, within AO353_07705at 1697.323 kb on + strand, within AO353_07705at 1697.324 kb on - strand, within AO353_07705at 1697.383 kb on + strand, within AO353_07705at 1697.383 kb on + strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.384 kb on - strand, within AO353_07705at 1697.897 kb on + strand, within AO353_07705at 1697.897 kb on + strand, within AO353_07705at 1697.903 kb on + strand, within AO353_07705at 1697.903 kb on + strand, within AO353_07705at 1697.903 kb on + strand, within AO353_07705at 1697.903 kb on + strand, within AO353_07705at 1698.033 kb on - strand, within AO353_07705at 1698.078 kb on - strand, within AO353_07705at 1698.146 kb on + strand, within AO353_07705at 1698.146 kb on + strand, within AO353_07705at 1698.146 kb on + strand, within AO353_07705at 1698.146 kb on + strand, within AO353_07705at 1698.146 kb on + strand, within AO353_07705at 1698.147 kb on - strand, within AO353_07705at 1698.147 kb on - strand, within AO353_07705at 1698.147 kb on - strand, within AO353_07705at 1698.147 kb on - strand, within AO353_07705at 1698.147 kb on - strand, within AO353_07705at 1698.442 kb on + strand, within AO353_07705at 1698.443 kb on - strand, within AO353_07705at 1698.443 kb on - strand, within AO353_07705at 1698.443 kb on - strand, within AO353_07705at 1698.510 kb on - strand, within AO353_07705at 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.595 kb on + strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.596 kb on - strandat 1698.612 kb on + strandat 1698.612 kb on + strandat 1698.612 kb on + strandat 1698.612 kb on + strandat 1698.612 kb on + strandat 1698.613 kb on - strandat 1698.634 kb on + strandat 1698.634 kb on + strandat 1698.634 kb on + strandat 1698.634 kb on + strandat 1698.635 kb on - strandat 1698.635 kb on - strandat 1698.775 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.836 kb on - strandat 1698.898 kb on + strandat 1698.898 kb on + strandat 1698.898 kb on + strandat 1698.898 kb on + strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.899 kb on - strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.907 kb on + strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.908 kb on - strandat 1698.982 kb on + strandat 1698.982 kb on + strandat 1698.982 kb on + strandat 1698.982 kb on + strandat 1698.983 kb on - strandat 1698.983 kb on - strandat 1698.983 kb on - strandat 1698.983 kb on - strandat 1698.983 kb on - strandat 1698.983 kb on - strandat 1699.021 kb on + strandat 1699.021 kb on + strandat 1699.022 kb on - strandat 1699.041 kb on - strandat 1699.041 kb on - strandat 1699.178 kb on - strandat 1699.180 kb on + strandat 1699.180 kb on + strandat 1699.181 kb on - strandat 1699.255 kb on + strand, within AO353_07710at 1699.297 kb on + strand, within AO353_07710at 1699.345 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.360 kb on + strand, within AO353_07710at 1699.361 kb on - strand, within AO353_07710at 1699.361 kb on - strand, within AO353_07710at 1699.361 kb on - strand, within AO353_07710at 1699.361 kb on - strand, within AO353_07710at 1699.376 kb on + strand, within AO353_07710at 1699.377 kb on - strand, within AO353_07710at 1699.377 kb on - strand, within AO353_07710at 1699.377 kb on - strand, within AO353_07710at 1699.447 kb on + strand, within AO353_07710at 1699.447 kb on + strand, within AO353_07710at 1699.448 kb on - strand, within AO353_07710at 1699.448 kb on - strand, within AO353_07710at 1699.448 kb on - strand, within AO353_07710at 1699.489 kb on + strand, within AO353_07710at 1699.489 kb on + strand, within AO353_07710at 1699.489 kb on + strand, within AO353_07710at 1699.489 kb on + strand, within AO353_07710at 1699.490 kb on - strand, within AO353_07710at 1699.490 kb on - strand, within AO353_07710at 1699.490 kb on - strand, within AO353_07710at 1699.760 kb on + strand, within AO353_07710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,696,562 + AO353_07700 0.78 -3.2
1,696,562 + AO353_07700 0.78 -0.9
1,696,562 + AO353_07700 0.78 -0.2
1,696,562 + AO353_07700 0.78 +2.0
1,696,562 + AO353_07700 0.78 -0.4
1,696,562 + AO353_07700 0.78 +0.9
1,696,563 - AO353_07700 0.78 +0.5
1,696,563 - AO353_07700 0.78 -0.7
1,696,563 - AO353_07700 0.78 +0.3
1,696,819 - +0.3
1,697,154 + AO353_07705 0.17 -0.3
1,697,154 + AO353_07705 0.17 -0.7
1,697,173 + AO353_07705 0.18 -0.2
1,697,174 - AO353_07705 0.18 +0.4
1,697,185 + AO353_07705 0.18 +0.1
1,697,185 + AO353_07705 0.18 +0.7
1,697,186 - AO353_07705 0.18 +0.3
1,697,197 + AO353_07705 0.19 -0.1
1,697,198 - AO353_07705 0.19 +0.1
1,697,198 - AO353_07705 0.19 -0.3
1,697,212 + AO353_07705 0.20 -0.9
1,697,212 + AO353_07705 0.20 +0.5
1,697,212 + AO353_07705 0.20 -0.7
1,697,213 - AO353_07705 0.20 -0.9
1,697,213 - AO353_07705 0.20 -0.4
1,697,213 - AO353_07705 0.20 -1.6
1,697,213 - AO353_07705 0.20 +0.0
1,697,213 - AO353_07705 0.20 -1.0
1,697,278 + AO353_07705 0.23 +0.3
1,697,278 + AO353_07705 0.23 -0.6
1,697,278 + AO353_07705 0.23 +0.1
1,697,278 + AO353_07705 0.23 +0.1
1,697,278 + AO353_07705 0.23 +0.4
1,697,278 + AO353_07705 0.23 +0.6
1,697,278 + AO353_07705 0.23 +0.5
1,697,278 + AO353_07705 0.23 +0.0
1,697,278 + AO353_07705 0.23 +0.1
1,697,278 + AO353_07705 0.23 -0.4
1,697,278 + AO353_07705 0.23 -0.5
1,697,278 + AO353_07705 0.23 -0.1
1,697,278 + AO353_07705 0.23 +0.1
1,697,279 - AO353_07705 0.23 +0.9
1,697,279 - AO353_07705 0.23 +0.9
1,697,279 - AO353_07705 0.23 -0.4
1,697,279 - AO353_07705 0.23 -0.3
1,697,279 - AO353_07705 0.23 +0.7
1,697,279 - AO353_07705 0.23 -1.6
1,697,279 - AO353_07705 0.23 +1.4
1,697,279 - AO353_07705 0.23 +0.0
1,697,279 - AO353_07705 0.23 -0.4
1,697,279 - AO353_07705 0.23 -0.9
1,697,279 - AO353_07705 0.23 -0.9
1,697,302 + AO353_07705 0.24 +0.5
1,697,302 + AO353_07705 0.24 +0.7
1,697,302 + AO353_07705 0.24 +1.0
1,697,302 + AO353_07705 0.24 +0.3
1,697,303 - AO353_07705 0.24 +1.7
1,697,303 - AO353_07705 0.24 -0.0
1,697,303 - AO353_07705 0.24 +0.3
1,697,323 + AO353_07705 0.25 +0.7
1,697,323 + AO353_07705 0.25 -0.6
1,697,324 - AO353_07705 0.25 -0.2
1,697,383 + AO353_07705 0.28 +0.4
1,697,383 + AO353_07705 0.28 +0.5
1,697,384 - AO353_07705 0.28 -0.6
1,697,384 - AO353_07705 0.28 -0.1
1,697,384 - AO353_07705 0.28 +0.0
1,697,384 - AO353_07705 0.28 +1.4
1,697,384 - AO353_07705 0.28 -0.9
1,697,384 - AO353_07705 0.28 +2.1
1,697,384 - AO353_07705 0.28 -0.5
1,697,897 + AO353_07705 0.55 +0.5
1,697,897 + AO353_07705 0.55 -0.6
1,697,903 + AO353_07705 0.55 -1.0
1,697,903 + AO353_07705 0.55 -0.7
1,697,903 + AO353_07705 0.55 -0.1
1,697,903 + AO353_07705 0.55 +0.3
1,698,033 - AO353_07705 0.62 -0.4
1,698,078 - AO353_07705 0.64 +1.7
1,698,146 + AO353_07705 0.67 +0.3
1,698,146 + AO353_07705 0.67 +0.1
1,698,146 + AO353_07705 0.67 +0.8
1,698,146 + AO353_07705 0.67 -0.4
1,698,146 + AO353_07705 0.67 -0.2
1,698,147 - AO353_07705 0.68 +0.4
1,698,147 - AO353_07705 0.68 +1.7
1,698,147 - AO353_07705 0.68 +0.4
1,698,147 - AO353_07705 0.68 +0.8
1,698,147 - AO353_07705 0.68 +0.3
1,698,442 + AO353_07705 0.83 +0.4
1,698,443 - AO353_07705 0.83 -0.7
1,698,443 - AO353_07705 0.83 +0.1
1,698,443 - AO353_07705 0.83 -0.1
1,698,510 - AO353_07705 0.86 -1.2
1,698,595 + -0.9
1,698,595 + +0.8
1,698,595 + -0.3
1,698,595 + -1.9
1,698,595 + -0.9
1,698,595 + -0.3
1,698,595 + +0.7
1,698,595 + +0.1
1,698,595 + -1.3
1,698,595 + -0.3
1,698,595 + +0.5
1,698,595 + -0.6
1,698,595 + +1.5
1,698,595 + -0.0
1,698,596 - -0.3
1,698,596 - +2.3
1,698,596 - -0.2
1,698,596 - -0.0
1,698,596 - -0.7
1,698,596 - -0.7
1,698,596 - -1.4
1,698,596 - +0.2
1,698,596 - -0.8
1,698,596 - +0.5
1,698,612 + -0.7
1,698,612 + -1.5
1,698,612 + -1.8
1,698,612 + +0.5
1,698,612 + +1.0
1,698,613 - -0.1
1,698,634 + +0.4
1,698,634 + +0.1
1,698,634 + -1.3
1,698,634 + -0.3
1,698,635 - +2.2
1,698,635 - +0.8
1,698,775 - +0.1
1,698,836 - +0.4
1,698,836 - +1.1
1,698,836 - +0.5
1,698,836 - +1.3
1,698,836 - +0.3
1,698,836 - +0.7
1,698,836 - -0.6
1,698,898 + +0.9
1,698,898 + -0.4
1,698,898 + -0.9
1,698,898 + +0.1
1,698,899 - -0.3
1,698,899 - +2.1
1,698,899 - -0.7
1,698,899 - -0.2
1,698,899 - +0.2
1,698,899 - -1.1
1,698,899 - -0.7
1,698,907 + -1.3
1,698,907 + +0.5
1,698,907 + -0.5
1,698,907 + +0.3
1,698,907 + -0.2
1,698,907 + -0.3
1,698,907 + +0.4
1,698,908 - -0.3
1,698,908 - +0.5
1,698,908 - +0.7
1,698,908 - -0.5
1,698,908 - -0.3
1,698,908 - +0.1
1,698,908 - +0.2
1,698,908 - +2.3
1,698,982 + +0.1
1,698,982 + -0.3
1,698,982 + +0.8
1,698,982 + -0.9
1,698,983 - +0.7
1,698,983 - -0.6
1,698,983 - +0.6
1,698,983 - +0.7
1,698,983 - +0.1
1,698,983 - +0.2
1,699,021 + +0.7
1,699,021 + -0.4
1,699,022 - -1.3
1,699,041 - +0.4
1,699,041 - -0.3
1,699,178 - -2.2
1,699,180 + +0.5
1,699,180 + -0.5
1,699,181 - -0.5
1,699,255 + AO353_07710 0.13 +0.3
1,699,297 + AO353_07710 0.15 -1.5
1,699,345 + AO353_07710 0.17 -0.5
1,699,360 + AO353_07710 0.18 +0.0
1,699,360 + AO353_07710 0.18 -0.5
1,699,360 + AO353_07710 0.18 +0.3
1,699,360 + AO353_07710 0.18 +0.5
1,699,360 + AO353_07710 0.18 +0.8
1,699,360 + AO353_07710 0.18 -1.6
1,699,360 + AO353_07710 0.18 +0.8
1,699,360 + AO353_07710 0.18 -1.3
1,699,360 + AO353_07710 0.18 +0.5
1,699,361 - AO353_07710 0.18 +0.9
1,699,361 - AO353_07710 0.18 -0.3
1,699,361 - AO353_07710 0.18 -0.1
1,699,361 - AO353_07710 0.18 +0.8
1,699,376 + AO353_07710 0.19 -0.8
1,699,377 - AO353_07710 0.19 -0.1
1,699,377 - AO353_07710 0.19 +0.2
1,699,377 - AO353_07710 0.19 -0.7
1,699,447 + AO353_07710 0.22 -0.4
1,699,447 + AO353_07710 0.22 -0.9
1,699,448 - AO353_07710 0.22 -1.6
1,699,448 - AO353_07710 0.22 +0.6
1,699,448 - AO353_07710 0.22 +0.2
1,699,489 + AO353_07710 0.24 -0.9
1,699,489 + AO353_07710 0.24 +1.2
1,699,489 + AO353_07710 0.24 -0.7
1,699,489 + AO353_07710 0.24 -0.7
1,699,490 - AO353_07710 0.24 +0.1
1,699,490 - AO353_07710 0.24 -1.3
1,699,490 - AO353_07710 0.24 +0.7
1,699,760 + AO353_07710 0.37 -0.0

Or see this region's nucleotide sequence