Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07610

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07605 and AO353_07610 overlap by 42 nucleotidesAO353_07610 and AO353_07615 are separated by 212 nucleotides AO353_07605: AO353_07605 - acyltransferase, at 1,675,393 to 1,676,322 _07605 AO353_07610: AO353_07610 - hypothetical protein, at 1,676,281 to 1,676,844 _07610 AO353_07615: AO353_07615 - hypothetical protein, at 1,677,057 to 1,677,620 _07615 Position (kb) 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1675.357 kb on + strandat 1675.358 kb on - strandat 1675.358 kb on - strandat 1675.379 kb on + strandat 1675.379 kb on + strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.380 kb on - strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.388 kb on + strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.389 kb on - strandat 1675.392 kb on + strandat 1675.392 kb on + strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.393 kb on - strandat 1675.436 kb on + strandat 1675.436 kb on + strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.437 kb on - strandat 1675.497 kb on - strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.642 kb on + strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.643 kb on - strand, within AO353_07605at 1675.807 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.915 kb on + strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.916 kb on - strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.979 kb on + strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1675.980 kb on - strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.012 kb on + strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.013 kb on - strand, within AO353_07605at 1676.065 kb on + strand, within AO353_07605at 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.246 kb on + strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.247 kb on - strandat 1676.313 kb on + strandat 1676.314 kb on - strandat 1676.320 kb on + strandat 1676.321 kb on - strandat 1676.579 kb on + strand, within AO353_07610at 1676.580 kb on - strand, within AO353_07610at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.127 kb on + strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.128 kb on - strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.338 kb on + strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.339 kb on - strand, within AO353_07615at 1677.355 kb on + strand, within AO353_07615at 1677.355 kb on + strand, within AO353_07615at 1677.680 kb on + strandat 1677.681 kb on - strandat 1677.694 kb on - strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.696 kb on + strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.697 kb on - strandat 1677.742 kb on - strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.791 kb on + strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.792 kb on - strandat 1677.794 kb on - strandat 1677.794 kb on - strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.832 kb on + strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strandat 1677.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,675,357 + -1.0
1,675,358 - -1.7
1,675,358 - -0.3
1,675,379 + -0.2
1,675,379 + -0.4
1,675,380 - +0.7
1,675,380 - +0.0
1,675,380 - -0.8
1,675,380 - -0.3
1,675,380 - -0.3
1,675,388 + +0.8
1,675,388 + -0.9
1,675,388 + -0.4
1,675,388 + -0.4
1,675,388 + -1.1
1,675,388 + +0.4
1,675,388 + -0.1
1,675,388 + +0.9
1,675,388 + -0.7
1,675,389 - +0.6
1,675,389 - +1.4
1,675,389 - +0.2
1,675,389 - +0.5
1,675,389 - -1.0
1,675,389 - -1.9
1,675,389 - +0.7
1,675,392 + -0.0
1,675,392 + +0.5
1,675,393 - -0.1
1,675,393 - +0.0
1,675,393 - -1.1
1,675,393 - +0.4
1,675,393 - +0.9
1,675,393 - +1.4
1,675,393 - -0.1
1,675,436 + -0.4
1,675,436 + +0.3
1,675,437 - -0.3
1,675,437 - -0.1
1,675,437 - +0.7
1,675,437 - +0.1
1,675,497 - AO353_07605 0.11 -0.6
1,675,642 + AO353_07605 0.27 -0.0
1,675,642 + AO353_07605 0.27 +2.3
1,675,642 + AO353_07605 0.27 -1.5
1,675,642 + AO353_07605 0.27 -0.3
1,675,643 - AO353_07605 0.27 +0.4
1,675,643 - AO353_07605 0.27 +0.1
1,675,643 - AO353_07605 0.27 +0.4
1,675,643 - AO353_07605 0.27 +0.7
1,675,643 - AO353_07605 0.27 +1.7
1,675,807 + AO353_07605 0.45 -1.0
1,675,915 + AO353_07605 0.56 +0.4
1,675,915 + AO353_07605 0.56 +1.0
1,675,915 + AO353_07605 0.56 +0.6
1,675,915 + AO353_07605 0.56 +0.4
1,675,916 - AO353_07605 0.56 +0.2
1,675,916 - AO353_07605 0.56 -1.9
1,675,916 - AO353_07605 0.56 +0.6
1,675,916 - AO353_07605 0.56 +0.1
1,675,979 + AO353_07605 0.63 +1.7
1,675,979 + AO353_07605 0.63 +0.4
1,675,979 + AO353_07605 0.63 -0.3
1,675,979 + AO353_07605 0.63 +0.9
1,675,979 + AO353_07605 0.63 -0.0
1,675,980 - AO353_07605 0.63 -0.1
1,675,980 - AO353_07605 0.63 +0.7
1,675,980 - AO353_07605 0.63 +0.4
1,675,980 - AO353_07605 0.63 +0.5
1,676,012 + AO353_07605 0.67 -1.0
1,676,012 + AO353_07605 0.67 +0.5
1,676,012 + AO353_07605 0.67 +0.5
1,676,012 + AO353_07605 0.67 -0.0
1,676,012 + AO353_07605 0.67 -0.1
1,676,012 + AO353_07605 0.67 +0.6
1,676,013 - AO353_07605 0.67 +0.2
1,676,013 - AO353_07605 0.67 +0.1
1,676,013 - AO353_07605 0.67 +0.5
1,676,065 + AO353_07605 0.72 +1.0
1,676,246 + -0.2
1,676,246 + -0.6
1,676,246 + -0.7
1,676,246 + -0.4
1,676,246 + +0.5
1,676,247 - +0.3
1,676,247 - +0.2
1,676,247 - -0.4
1,676,247 - +0.4
1,676,247 - +0.9
1,676,313 + -1.1
1,676,314 - -0.2
1,676,320 + -1.0
1,676,321 - +0.1
1,676,579 + AO353_07610 0.53 -2.5
1,676,580 - AO353_07610 0.53 -0.4
1,677,127 + AO353_07615 0.12 +0.0
1,677,127 + AO353_07615 0.12 -0.7
1,677,127 + AO353_07615 0.12 -1.0
1,677,128 - AO353_07615 0.13 +0.3
1,677,128 - AO353_07615 0.13 -0.1
1,677,128 - AO353_07615 0.13 -0.3
1,677,128 - AO353_07615 0.13 +1.1
1,677,128 - AO353_07615 0.13 +0.4
1,677,128 - AO353_07615 0.13 -0.4
1,677,338 + AO353_07615 0.50 +0.4
1,677,338 + AO353_07615 0.50 +0.1
1,677,338 + AO353_07615 0.50 +0.2
1,677,338 + AO353_07615 0.50 -0.8
1,677,339 - AO353_07615 0.50 +1.9
1,677,339 - AO353_07615 0.50 -0.2
1,677,339 - AO353_07615 0.50 +0.1
1,677,355 + AO353_07615 0.53 +0.2
1,677,355 + AO353_07615 0.53 +0.7
1,677,680 + +0.7
1,677,681 - +0.7
1,677,694 - +0.4
1,677,696 + -1.3
1,677,696 + -0.9
1,677,696 + +1.2
1,677,696 + +0.9
1,677,696 + +1.7
1,677,696 + -0.4
1,677,696 + +0.0
1,677,697 - -0.5
1,677,697 - -0.2
1,677,697 - -0.7
1,677,697 - +3.3
1,677,697 - +0.4
1,677,697 - +0.7
1,677,697 - -0.2
1,677,697 - -0.4
1,677,697 - -0.5
1,677,697 - -0.9
1,677,697 - +0.3
1,677,742 - +0.7
1,677,791 + +0.1
1,677,791 + +0.9
1,677,791 + -0.4
1,677,791 + +0.7
1,677,791 + +0.2
1,677,791 + -0.5
1,677,791 + +0.9
1,677,791 + -0.2
1,677,792 - +0.7
1,677,792 - -1.4
1,677,792 - +0.7
1,677,792 - -0.2
1,677,792 - -0.6
1,677,792 - +0.1
1,677,792 - -0.3
1,677,792 - -0.3
1,677,792 - -1.6
1,677,792 - +1.5
1,677,792 - -0.4
1,677,792 - +1.3
1,677,792 - -1.0
1,677,792 - -0.1
1,677,792 - -0.7
1,677,792 - +0.5
1,677,792 - +0.7
1,677,794 - +1.1
1,677,794 - -0.3
1,677,832 + -0.6
1,677,832 + +1.0
1,677,832 + -0.8
1,677,832 + -1.1
1,677,833 - +0.3
1,677,833 - +0.9
1,677,833 - +0.4
1,677,833 - -0.9
1,677,833 - -0.5
1,677,833 - -0.1

Or see this region's nucleotide sequence