Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02065

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02060 and AO353_02065 are separated by 28 nucleotidesAO353_02065 and AO353_02070 are separated by 11 nucleotides AO353_02060: AO353_02060 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 437,751 to 439,958 _02060 AO353_02065: AO353_02065 - aspartate aminotransferase, at 439,987 to 441,099 _02065 AO353_02070: AO353_02070 - prephenate dehydratase, at 441,111 to 442,205 _02070 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.215 kb on - strand, within AO353_02060at 439.215 kb on - strand, within AO353_02060at 439.353 kb on - strand, within AO353_02060at 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 440.081 kb on + strandat 440.081 kb on + strandat 440.081 kb on + strandat 440.082 kb on - strandat 440.082 kb on - strandat 440.082 kb on - strandat 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.379 kb on - strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.406 kb on - strand, within AO353_02065at 440.492 kb on + strand, within AO353_02065at 440.493 kb on - strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 441.045 kb on - strandat 441.045 kb on - strandat 441.045 kb on - strandat 441.100 kb on + strandat 441.101 kb on - strandat 441.101 kb on - strandat 441.112 kb on + strandat 441.113 kb on - strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.189 kb on + strandat 441.190 kb on - strandat 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.708 kb on - strand, within AO353_02070at 441.913 kb on + strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.085 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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439,085 - AO353_02060 0.60 +0.5
439,085 - AO353_02060 0.60 -0.5
439,085 - AO353_02060 0.60 +0.2
439,085 - AO353_02060 0.60 -0.4
439,085 - AO353_02060 0.60 -0.8
439,085 - AO353_02060 0.60 -0.6
439,215 - AO353_02060 0.66 -0.6
439,215 - AO353_02060 0.66 -0.1
439,353 - AO353_02060 0.73 -1.1
439,958 + -2.5
439,958 + -1.0
439,958 + -1.0
439,958 + -1.8
439,958 + -0.8
439,958 + -1.1
439,958 + -0.2
439,959 - +0.2
439,959 - -1.7
439,959 - -0.4
439,959 - -1.3
439,959 - +0.1
440,081 + +0.2
440,081 + +1.2
440,081 + +0.2
440,082 - -0.2
440,082 - -1.0
440,082 - -2.1
440,267 + AO353_02065 0.25 -2.0
440,267 + AO353_02065 0.25 -1.3
440,267 + AO353_02065 0.25 +2.2
440,268 - AO353_02065 0.25 -1.1
440,268 - AO353_02065 0.25 -0.4
440,379 - AO353_02065 0.35 -1.5
440,405 + AO353_02065 0.38 +0.4
440,405 + AO353_02065 0.38 -2.6
440,406 - AO353_02065 0.38 +0.2
440,492 + AO353_02065 0.45 +2.2
440,493 - AO353_02065 0.45 -0.8
440,501 + AO353_02065 0.46 -1.1
440,501 + AO353_02065 0.46 -1.9
440,501 + AO353_02065 0.46 -0.7
440,501 + AO353_02065 0.46 +0.2
440,501 + AO353_02065 0.46 -1.6
440,501 + AO353_02065 0.46 -2.1
440,501 + AO353_02065 0.46 +0.6
440,502 - AO353_02065 0.46 -0.8
440,502 - AO353_02065 0.46 -1.0
440,502 - AO353_02065 0.46 -2.1
440,502 - AO353_02065 0.46 -1.4
440,502 - AO353_02065 0.46 -2.0
440,502 - AO353_02065 0.46 -0.4
440,502 - AO353_02065 0.46 -0.7
440,502 - AO353_02065 0.46 -0.2
440,502 - AO353_02065 0.46 -1.1
440,502 - AO353_02065 0.46 +0.8
440,502 - AO353_02065 0.46 +0.2
440,502 - AO353_02065 0.46 -1.4
440,774 + AO353_02065 0.71 -0.4
440,774 + AO353_02065 0.71 -1.4
440,774 + AO353_02065 0.71 -1.8
440,775 - AO353_02065 0.71 +1.8
440,775 - AO353_02065 0.71 -0.4
440,775 - AO353_02065 0.71 -0.2
440,775 - AO353_02065 0.71 -2.1
441,045 - -0.2
441,045 - -1.5
441,045 - -0.3
441,100 + -0.8
441,101 - -1.4
441,101 - -0.6
441,112 + -1.1
441,113 - -0.1
441,146 + +0.0
441,146 + -0.4
441,146 + -0.8
441,146 + -0.4
441,146 + -3.9
441,146 + -1.6
441,146 + -1.1
441,146 + -2.0
441,146 + -2.4
441,147 - +2.2
441,147 - -1.4
441,147 - -1.8
441,189 + -2.9
441,190 - -2.9
441,235 + AO353_02070 0.11 -1.4
441,235 + AO353_02070 0.11 -0.4
441,235 + AO353_02070 0.11 -2.3
441,236 - AO353_02070 0.11 -0.8
441,236 - AO353_02070 0.11 -2.3
441,236 - AO353_02070 0.11 -0.8
441,236 - AO353_02070 0.11 -2.7
441,236 - AO353_02070 0.11 -2.1
441,236 - AO353_02070 0.11 -2.6
441,236 - AO353_02070 0.11 -0.8
441,466 + AO353_02070 0.32 -2.6
441,466 + AO353_02070 0.32 -2.0
441,466 + AO353_02070 0.32 -4.0
441,466 + AO353_02070 0.32 -1.8
441,466 + AO353_02070 0.32 -2.4
441,625 + AO353_02070 0.47 -1.8
441,625 + AO353_02070 0.47 -1.6
441,625 + AO353_02070 0.47 -0.4
441,626 - AO353_02070 0.47 -1.8
441,626 - AO353_02070 0.47 +0.2
441,626 - AO353_02070 0.47 -0.4
441,626 - AO353_02070 0.47 -1.6
441,626 - AO353_02070 0.47 -1.8
441,707 + AO353_02070 0.54 -2.8
441,707 + AO353_02070 0.54 -2.4
441,707 + AO353_02070 0.54 -2.3
441,708 - AO353_02070 0.55 -1.1
441,913 + AO353_02070 0.73 -2.0
442,055 - AO353_02070 0.86 -2.3
442,055 - AO353_02070 0.86 -3.0
442,085 + AO353_02070 0.89 -2.1
442,095 + AO353_02070 0.90 -2.1
442,095 + AO353_02070 0.90 -0.8

Or see this region's nucleotide sequence