Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00650

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00640 and AO353_00645 are separated by 22 nucleotidesAO353_00645 and AO353_00650 overlap by 8 nucleotidesAO353_00650 and AO353_00655 are separated by 257 nucleotides AO353_00640: AO353_00640 - carbonate dehydratase, at 135,059 to 137,509 _00640 AO353_00645: AO353_00645 - cytochrome C oxidase Cbb3, at 137,532 to 137,762 _00645 AO353_00650: AO353_00650 - cytochrome biogenesis protein, at 137,755 to 138,438 _00650 AO353_00655: AO353_00655 - coproporphyrinogen III oxidase, at 138,696 to 140,078 _00655 Position (kb) 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 137.293 kb on + strandat 137.293 kb on + strandat 137.337 kb on - strandat 137.589 kb on + strand, within AO353_00645at 137.908 kb on + strand, within AO353_00650at 138.110 kb on + strand, within AO353_00650at 138.110 kb on + strand, within AO353_00650at 138.110 kb on + strand, within AO353_00650at 138.110 kb on + strand, within AO353_00650at 138.111 kb on - strand, within AO353_00650at 138.111 kb on - strand, within AO353_00650at 138.349 kb on - strand, within AO353_00650at 138.436 kb on + strandat 138.436 kb on + strandat 138.436 kb on + strandat 138.436 kb on + strandat 138.437 kb on - strandat 138.437 kb on - strandat 138.437 kb on - strandat 138.437 kb on - strandat 138.456 kb on + strandat 138.456 kb on + strandat 138.456 kb on + strandat 138.457 kb on - strandat 138.457 kb on - strandat 138.462 kb on + strandat 138.462 kb on + strandat 138.462 kb on + strandat 138.463 kb on - strandat 138.503 kb on - strandat 138.544 kb on + strandat 138.545 kb on - strandat 138.545 kb on - strandat 138.557 kb on + strandat 138.557 kb on + strandat 138.557 kb on + strandat 138.557 kb on + strandat 138.557 kb on + strandat 138.557 kb on + strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.558 kb on - strandat 138.588 kb on + strandat 138.588 kb on + strandat 138.589 kb on - strandat 138.589 kb on - strandat 138.589 kb on - strandat 138.759 kb on + strandat 138.760 kb on - strandat 138.804 kb on - strandat 138.864 kb on + strand, within AO353_00655at 138.864 kb on + strand, within AO353_00655at 138.864 kb on + strand, within AO353_00655at 138.864 kb on + strand, within AO353_00655at 138.864 kb on + strand, within AO353_00655at 138.864 kb on + strandat 138.865 kb on - strand, within AO353_00655at 138.865 kb on - strand, within AO353_00655at 138.865 kb on - strand, within AO353_00655at 138.897 kb on + strand, within AO353_00655at 138.897 kb on + strand, within AO353_00655at 138.898 kb on - strand, within AO353_00655at 138.898 kb on - strand, within AO353_00655at 138.900 kb on + strand, within AO353_00655at 138.900 kb on + strand, within AO353_00655at 138.900 kb on + strand, within AO353_00655at 138.901 kb on - strand, within AO353_00655at 138.901 kb on - strand, within AO353_00655at 138.901 kb on - strand, within AO353_00655at 138.952 kb on - strand, within AO353_00655at 139.241 kb on - strand, within AO353_00655at 139.341 kb on + strand, within AO353_00655at 139.341 kb on + strand, within AO353_00655at 139.342 kb on - strand, within AO353_00655at 139.342 kb on - strand, within AO353_00655at 139.342 kb on - strand, within AO353_00655at 139.342 kb on - strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.431 kb on + strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655at 139.432 kb on - strand, within AO353_00655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
137,293 + -0.9
137,293 + -1.1
137,337 - -0.5
137,589 + AO353_00645 0.25 +1.7
137,908 + AO353_00650 0.22 -0.5
138,110 + AO353_00650 0.52 -0.7
138,110 + AO353_00650 0.52 -1.2
138,110 + AO353_00650 0.52 +0.1
138,110 + AO353_00650 0.52 -0.2
138,111 - AO353_00650 0.52 +0.8
138,111 - AO353_00650 0.52 -0.1
138,349 - AO353_00650 0.87 -1.2
138,436 + -0.0
138,436 + +1.0
138,436 + -0.5
138,436 + +1.5
138,437 - +1.1
138,437 - -0.5
138,437 - -0.7
138,437 - +0.3
138,456 + +0.3
138,456 + +0.7
138,456 + +0.1
138,457 - +0.3
138,457 - -0.2
138,462 + -1.1
138,462 + +2.1
138,462 + -0.8
138,463 - -1.2
138,503 - +0.4
138,544 + +0.8
138,545 - +0.1
138,545 - -1.8
138,557 + -1.0
138,557 + +1.7
138,557 + -0.2
138,557 + +1.4
138,557 + +1.1
138,557 + -1.7
138,558 - -1.9
138,558 - +0.3
138,558 - -0.6
138,558 - -0.7
138,558 - +1.6
138,558 - +0.2
138,558 - +0.3
138,558 - -0.5
138,558 - +0.9
138,558 - -1.0
138,558 - +0.3
138,588 + +0.2
138,588 + +0.2
138,589 - -0.5
138,589 - +1.8
138,589 - -0.6
138,759 + -0.7
138,760 - -0.2
138,804 - -0.1
138,864 + AO353_00655 0.12 -0.4
138,864 + AO353_00655 0.12 +1.1
138,864 + AO353_00655 0.12 -0.7
138,864 + AO353_00655 0.12 +0.4
138,864 + AO353_00655 0.12 -0.8
138,864 + +0.5
138,865 - AO353_00655 0.12 +0.3
138,865 - AO353_00655 0.12 +0.5
138,865 - AO353_00655 0.12 -0.2
138,897 + AO353_00655 0.15 +1.1
138,897 + AO353_00655 0.15 -0.7
138,898 - AO353_00655 0.15 -0.2
138,898 - AO353_00655 0.15 +0.8
138,900 + AO353_00655 0.15 -0.2
138,900 + AO353_00655 0.15 +0.3
138,900 + AO353_00655 0.15 +0.9
138,901 - AO353_00655 0.15 +0.9
138,901 - AO353_00655 0.15 +0.1
138,901 - AO353_00655 0.15 -0.1
138,952 - AO353_00655 0.19 +0.1
139,241 - AO353_00655 0.39 -2.1
139,341 + AO353_00655 0.47 +0.8
139,341 + AO353_00655 0.47 -0.1
139,342 - AO353_00655 0.47 -0.7
139,342 - AO353_00655 0.47 -0.2
139,342 - AO353_00655 0.47 -1.0
139,342 - AO353_00655 0.47 +0.4
139,431 + AO353_00655 0.53 +0.3
139,431 + AO353_00655 0.53 -1.3
139,431 + AO353_00655 0.53 -0.1
139,431 + AO353_00655 0.53 +1.1
139,431 + AO353_00655 0.53 -0.1
139,431 + AO353_00655 0.53 +0.3
139,431 + AO353_00655 0.53 -1.0
139,431 + AO353_00655 0.53 -0.5
139,431 + AO353_00655 0.53 -0.1
139,431 + AO353_00655 0.53 +0.5
139,431 + AO353_00655 0.53 +0.1
139,431 + AO353_00655 0.53 +0.1
139,432 - AO353_00655 0.53 -1.2
139,432 - AO353_00655 0.53 -0.5
139,432 - AO353_00655 0.53 +0.1
139,432 - AO353_00655 0.53 -0.8
139,432 - AO353_00655 0.53 +0.7
139,432 - AO353_00655 0.53 -1.2
139,432 - AO353_00655 0.53 +0.8
139,432 - AO353_00655 0.53 -0.7
139,432 - AO353_00655 0.53 -0.5
139,432 - AO353_00655 0.53 +0.5
139,432 - AO353_00655 0.53 -0.1
139,432 - AO353_00655 0.53 +0.0
139,432 - AO353_00655 0.53 -0.2

Or see this region's nucleotide sequence