Strain Fitness in Shewanella loihica PV-4 around Shew_3853

Experiment: Cisplatin 1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 1 mg/ml
4,583,215	-				-0.2
4,583,316	-				-2.3
4,583,410	+		Shew_3853	0.14	-1.8
4,583,502	+		Shew_3853	0.25	-1.3
4,583,525	+		Shew_3853	0.27	-2.9
4,583,525	+		Shew_3853	0.27	-1.2
4,583,583	-		Shew_3853	0.34	-1.6
4,583,625	+		Shew_3853	0.39	-1.6
4,583,633	-		Shew_3853	0.40	-0.9
4,583,633	-		Shew_3853	0.40	-1.6
4,583,633	-		Shew_3853	0.40	-1.8
4,583,633	-		Shew_3853	0.40	-1.5
4,583,633	-		Shew_3853	0.40	-2.3
4,583,633	-		Shew_3853	0.40	-1.3
4,583,714	-		Shew_3853	0.49	-2.7
4,583,846	+		Shew_3853	0.64	-2.7
4,583,901	-		Shew_3853	0.70	+0.5
4,584,011	-		Shew_3853	0.83	-1.7
4,584,035	-		Shew_3853	0.85	-1.8
4,584,112	+				-2.1
4,584,118	-				-1.3
4,584,118	-				-1.5
4,584,132	-				-2.1
4,584,260	-		Shew_3854	0.11	-0.3
4,584,260	-		Shew_3854	0.11	+0.2
4,584,436	+		Shew_3854	0.33	-0.1
4,584,444	-		Shew_3854	0.34	-0.6
4,584,444	-		Shew_3854	0.34	+0.2
4,584,818	+		Shew_3854	0.82	-0.1
4,584,963	+				-0.3
4,585,049	-				+2.6
4,585,051	-				+0.7
4,585,135	+	gidB	Shew_3855	0.11	+0.2
4,585,143	-	gidB	Shew_3855	0.12	-0.3