Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3688 and Shew_3689 are separated by 63 nucleotides Shew_3689 and Shew_3690 are separated by 23 nucleotides Shew_3690 and Shew_3691 are separated by 151 nucleotides
Shew_3688: Shew_3688 - molybdenum cofactor biosynthesis protein A (RefSeq), at 4,392,509 to 4,393,495
_3688
Shew_3689: Shew_3689 - hypothetical protein (RefSeq), at 4,393,559 to 4,394,011
_3689
Shew_3690: Shew_3690 - formamidopyrimidine-DNA glycosylase (RefSeq), at 4,394,035 to 4,394,850
_3690
Shew_3691: Shew_3691 - hypothetical protein (RefSeq), at 4,395,002 to 4,396,507
_3691
Position (kb) 4394
4395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4393.091 kb on - strand, within Shew_3688 at 4393.235 kb on - strand, within Shew_3688 at 4393.238 kb on + strand, within Shew_3688 at 4393.528 kb on - strand at 4393.774 kb on - strand, within Shew_3689 at 4393.837 kb on + strand, within Shew_3689 at 4394.133 kb on + strand, within Shew_3690 at 4394.338 kb on + strand, within Shew_3690 at 4394.381 kb on + strand, within Shew_3690 at 4394.766 kb on - strand, within Shew_3690 at 4394.776 kb on - strand at 4394.845 kb on + strand at 4394.846 kb on + strand at 4394.853 kb on - strand at 4394.874 kb on + strand at 4394.896 kb on - strand at 4395.021 kb on - strand at 4395.228 kb on - strand, within Shew_3691 at 4395.362 kb on + strand, within Shew_3691
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 4,393,091 - Shew_3688 0.59 +0.7 4,393,235 - Shew_3688 0.74 +0.5 4,393,238 + Shew_3688 0.74 +1.4 4,393,528 - +0.2 4,393,774 - Shew_3689 0.47 -0.6 4,393,837 + Shew_3689 0.61 +1.4 4,394,133 + Shew_3690 0.12 -0.3 4,394,338 + Shew_3690 0.37 +0.5 4,394,381 + Shew_3690 0.42 +0.7 4,394,766 - Shew_3690 0.90 +0.4 4,394,776 - +1.4 4,394,845 + +0.4 4,394,846 + +0.1 4,394,853 - -0.3 4,394,874 + +0.1 4,394,896 - +0.3 4,395,021 - -1.1 4,395,228 - Shew_3691 0.15 -3.4 4,395,362 + Shew_3691 0.24 -1.7
Or see this region's nucleotide sequence