Strain Fitness in Shewanella loihica PV-4 around Shew_3381
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,028,036 | - | +1.2 | |||
4,028,081 | + | Shew_3380 | 0.15 | -0.1 | |
4,028,142 | - | Shew_3380 | 0.22 | -0.2 | |
4,028,313 | + | Shew_3380 | 0.44 | +0.1 | |
4,028,406 | + | Shew_3380 | 0.55 | -1.9 | |
4,028,406 | + | Shew_3380 | 0.55 | -3.9 | |
4,028,427 | - | Shew_3380 | 0.58 | +1.4 | |
4,028,771 | - | -0.2 | |||
4,028,901 | + | -0.4 | |||
4,029,036 | + | Shew_3381 | 0.15 | -0.2 | |
4,029,044 | - | Shew_3381 | 0.15 | +0.1 | |
4,029,044 | - | Shew_3381 | 0.15 | +0.2 | |
4,029,242 | - | Shew_3381 | 0.26 | -1.4 | |
4,029,656 | - | Shew_3381 | 0.48 | -1.5 | |
4,029,735 | + | Shew_3381 | 0.52 | +0.4 | |
4,030,053 | - | Shew_3381 | 0.69 | -2.0 | |
4,030,301 | - | Shew_3381 | 0.83 | +0.4 |
Or see this region's nucleotide sequence