Strain Fitness in Shewanella loihica PV-4 around Shew_3346
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,990,096 | - | Shew_3345 | 0.49 | +0.6 | |
3,990,274 | - | Shew_3345 | 0.68 | -0.3 | |
3,990,295 | - | Shew_3345 | 0.71 | -0.3 | |
3,990,686 | - | -0.1 | |||
3,990,710 | - | +0.0 | |||
3,990,782 | - | +0.3 | |||
3,990,937 | - | Shew_3346 | 0.25 | +0.3 | |
3,990,976 | - | Shew_3346 | 0.31 | +2.1 | |
3,991,092 | + | Shew_3346 | 0.48 | -4.8 | |
3,991,100 | - | Shew_3346 | 0.49 | -0.8 | |
3,991,326 | - | Shew_3346 | 0.82 | -1.8 | |
3,991,561 | - | +2.4 | |||
3,991,563 | + | +1.7 | |||
3,991,793 | - | Shew_3347 | 0.18 | -0.1 | |
3,992,219 | + | Shew_3347 | 0.41 | +0.3 |
Or see this region's nucleotide sequence