Strain Fitness in Shewanella loihica PV-4 around Shew_3325
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,964,511 | - | Shew_3324 | 0.69 | +0.2 | |
| 3,964,525 | + | Shew_3324 | 0.71 | -1.8 | |
| 3,964,586 | - | Shew_3324 | 0.77 | -1.7 | |
| 3,965,031 | - | -0.2 | |||
| 3,965,766 | + | Shew_3325 | 0.42 | -0.3 | |
| 3,965,774 | - | Shew_3325 | 0.42 | -2.1 | |
| 3,965,820 | + | Shew_3325 | 0.46 | -0.3 | |
| 3,965,881 | + | Shew_3325 | 0.51 | -1.4 | |
| 3,965,943 | + | Shew_3325 | 0.57 | +0.5 | |
| 3,965,952 | - | Shew_3325 | 0.57 | -0.0 | |
| 3,966,283 | + | Shew_3325 | 0.86 | -0.4 | |
| 3,966,283 | + | Shew_3325 | 0.86 | -0.0 | |
| 3,966,291 | - | Shew_3325 | 0.86 | +1.2 | |
| 3,966,949 | - | Shew_3326 | 0.40 | +0.4 | |
| 3,967,011 | - | Shew_3326 | 0.45 | +0.1 | |
| 3,967,124 | - | Shew_3326 | 0.55 | +0.6 | |
| 3,967,275 | + | Shew_3326 | 0.67 | -0.2 | |
| 3,967,283 | - | Shew_3326 | 0.67 | -0.1 | |
| 3,967,283 | - | Shew_3326 | 0.67 | -0.4 |
Or see this region's nucleotide sequence