Strain Fitness in Shewanella loihica PV-4 around Shew_3278

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalr and Shew_3278 are separated by 109 nucleotidesShew_3278 and Shew_3279 are separated by 116 nucleotides Shew_3277: alr - alanine racemase (RefSeq), at 3,920,029 to 3,921,105 alr Shew_3278: Shew_3278 - replicative DNA helicase (RefSeq), at 3,921,215 to 3,922,621 _3278 Shew_3279: Shew_3279 - hypothetical protein (RefSeq), at 3,922,738 to 3,924,942 _3279 Position (kb) 3921 3922 3923Strain fitness (log2 ratio) -2 -1 0 1at 3923.415 kb on + strand, within Shew_3279at 3923.588 kb on + strand, within Shew_3279at 3923.588 kb on + strand, within Shew_3279at 3923.588 kb on + strand, within Shew_3279at 3923.591 kb on - strand, within Shew_3279at 3923.596 kb on - strand, within Shew_3279at 3923.596 kb on - strand, within Shew_3279at 3923.606 kb on - strand, within Shew_3279at 3923.606 kb on - strand, within Shew_3279

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,923,415 + Shew_3279 0.31 -2.0
3,923,588 + Shew_3279 0.39 -1.7
3,923,588 + Shew_3279 0.39 +0.5
3,923,588 + Shew_3279 0.39 +0.2
3,923,591 - Shew_3279 0.39 +0.7
3,923,596 - Shew_3279 0.39 -0.3
3,923,596 - Shew_3279 0.39 +0.6
3,923,606 - Shew_3279 0.39 +1.4
3,923,606 - Shew_3279 0.39 +0.2

Or see this region's nucleotide sequence