Strain Fitness in Shewanella loihica PV-4 around Shew_3266

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3264 and Shew_3265 are separated by 525 nucleotidesShew_3265 and dipZ overlap by 4 nucleotidesdipZ and Shew_3267 are separated by 152 nucleotides Shew_3264: Shew_3264 - FxsA cytoplasmic membrane protein (RefSeq), at 3,902,711 to 3,903,304 _3264 Shew_3265: Shew_3265 - CutA1 divalent ion tolerance protein (RefSeq), at 3,903,830 to 3,904,153 _3265 Shew_3266: dipZ - thiol:disulfide interchange protein precursor (RefSeq), at 3,904,150 to 3,905,958 dipZ Shew_3267: Shew_3267 - sodium/hydrogen exchanger (RefSeq), at 3,906,111 to 3,907,739 _3267 Position (kb) 3904 3905 3906Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3903.221 kb on + strand, within Shew_3264at 3903.421 kb on - strandat 3903.680 kb on - strandat 3903.788 kb on + strandat 3903.956 kb on + strand, within Shew_3265at 3904.763 kb on - strand, within dipZat 3905.585 kb on + strand, within dipZat 3905.751 kb on - strand, within dipZat 3905.841 kb on - strandat 3906.179 kb on + strandat 3906.269 kb on + strandat 3906.343 kb on - strand, within Shew_3267at 3906.745 kb on - strand, within Shew_3267at 3906.847 kb on - strand, within Shew_3267

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,903,221 + Shew_3264 0.86 +0.3
3,903,421 - -2.7
3,903,680 - -1.6
3,903,788 + +0.1
3,903,956 + Shew_3265 0.39 +0.7
3,904,763 - dipZ Shew_3266 0.34 -2.6
3,905,585 + dipZ Shew_3266 0.79 -0.5
3,905,751 - dipZ Shew_3266 0.89 -1.2
3,905,841 - -1.8
3,906,179 + +0.8
3,906,269 + +3.2
3,906,343 - Shew_3267 0.14 +0.9
3,906,745 - Shew_3267 0.39 +1.5
3,906,847 - Shew_3267 0.45 +4.4

Or see this region's nucleotide sequence