Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3115 and Shew_3116 are separated by 536 nucleotides Shew_3116 and Shew_3117 are separated by 1 nucleotides Shew_3117 and Shew_3118 are separated by 0 nucleotides
Shew_3115: Shew_3115 - sodium:dicarboxylate symporter (RefSeq), at 3,698,873 to 3,700,186
_3115
Shew_3116: Shew_3116 - predicted chromosome partitioning protein (with smc-like Shew_3118) (from data) , at 3,700,723 to 3,701,943
_3116
Shew_3117: Shew_3117 - predicted chromosome partitioning protein (with smc-like Shew_3118) (from data) , at 3,701,945 to 3,702,598
_3117
Shew_3118: Shew_3118 - smc-like chromosome partitioning protein (DUF3584) (from data) , at 3,702,599 to 3,706,270
_3118
Position (kb)
3700
3701
3702 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3699.936 kb on + strand, within Shew_3115 at 3700.714 kb on + strand at 3700.899 kb on - strand, within Shew_3116 at 3701.045 kb on - strand, within Shew_3116 at 3701.109 kb on - strand, within Shew_3116 at 3701.302 kb on + strand, within Shew_3116 at 3701.310 kb on - strand, within Shew_3116 at 3701.456 kb on + strand, within Shew_3116 at 3701.891 kb on + strand at 3701.925 kb on + strand at 3702.462 kb on + strand, within Shew_3117 at 3702.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 3,699,936 + Shew_3115 0.81 +0.7 3,700,714 + +0.7 3,700,899 - Shew_3116 0.14 -2.2 3,701,045 - Shew_3116 0.26 -2.5 3,701,109 - Shew_3116 0.32 -2.5 3,701,302 + Shew_3116 0.47 -1.9 3,701,310 - Shew_3116 0.48 -3.2 3,701,456 + Shew_3116 0.60 -3.5 3,701,891 + -1.4 3,701,925 + -3.6 3,702,462 + Shew_3117 0.79 -3.3 3,702,933 + -3.0
Or see this region's nucleotide sequence