Strain Fitness in Shewanella loihica PV-4 around Shew_3073

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3071 and Shew_3072 are separated by 15 nucleotidesShew_3072 and Shew_3073 are separated by 182 nucleotidesShew_3073 and Shew_3074 are separated by 133 nucleotidesShew_3074 and Shew_3075 are separated by 119 nucleotides Shew_3071: Shew_3071 - lipoprotein (RefSeq), at 3,646,825 to 3,647,334 _3071 Shew_3072: Shew_3072 - cold-shock protein, DNA-binding (RefSeq), at 3,647,350 to 3,647,943 _3072 Shew_3073: Shew_3073 - uracil-DNA glycosylase (RefSeq), at 3,648,126 to 3,648,794 _3073 Shew_3074: Shew_3074 - pilin, putative (RefSeq), at 3,648,928 to 3,649,464 _3074 Shew_3075: Shew_3075 - hypothetical protein (RefSeq), at 3,649,584 to 3,649,901 _3075 Position (kb) 3648 3649Strain fitness (log2 ratio) -2 -1 0 1 2at 3647.214 kb on - strand, within Shew_3071at 3647.228 kb on - strand, within Shew_3071at 3647.286 kb on + strandat 3647.286 kb on + strandat 3647.883 kb on + strand, within Shew_3072at 3647.891 kb on - strandat 3647.948 kb on - strandat 3648.004 kb on - strandat 3648.282 kb on - strand, within Shew_3073at 3648.446 kb on + strand, within Shew_3073at 3648.622 kb on + strand, within Shew_3073at 3648.630 kb on - strand, within Shew_3073at 3648.630 kb on - strand, within Shew_3073at 3648.631 kb on - strand, within Shew_3073at 3648.636 kb on - strand, within Shew_3073at 3648.663 kb on - strand, within Shew_3073at 3648.912 kb on + strandat 3649.217 kb on + strand, within Shew_3074at 3649.332 kb on - strand, within Shew_3074at 3649.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,647,214 - Shew_3071 0.76 +0.2
3,647,228 - Shew_3071 0.79 +0.7
3,647,286 + -0.8
3,647,286 + +0.2
3,647,883 + Shew_3072 0.90 +0.8
3,647,891 - +0.1
3,647,948 - +2.7
3,648,004 - +0.5
3,648,282 - Shew_3073 0.23 +0.0
3,648,446 + Shew_3073 0.48 -1.9
3,648,622 + Shew_3073 0.74 +0.7
3,648,630 - Shew_3073 0.75 -0.3
3,648,630 - Shew_3073 0.75 +0.5
3,648,631 - Shew_3073 0.75 +0.2
3,648,636 - Shew_3073 0.76 +1.7
3,648,663 - Shew_3073 0.80 +0.5
3,648,912 + +0.2
3,649,217 + Shew_3074 0.54 -1.8
3,649,332 - Shew_3074 0.75 +0.2
3,649,472 - +0.4

Or see this region's nucleotide sequence