Strain Fitness in Shewanella loihica PV-4 around Shew_3037

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3035 and Shew_3036 are separated by 163 nucleotidesShew_3036 and Shew_3037 overlap by 16 nucleotidesShew_3037 and Shew_3038 are separated by 206 nucleotides Shew_3035: Shew_3035 - hypothetical protein (RefSeq), at 3,606,127 to 3,606,375 _3035 Shew_3036: Shew_3036 - hypothetical protein (RefSeq), at 3,606,539 to 3,607,366 _3036 Shew_3037: Shew_3037 - alpha-L-glutamate ligase (RefSeq), at 3,607,351 to 3,608,304 _3037 Shew_3038: Shew_3038 - asparagine synthase (glutamine-hydrolyzing) (RefSeq), at 3,608,511 to 3,610,283 _3038 Position (kb) 3607 3608 3609Strain fitness (log2 ratio) -2 -1 0 1at 3606.414 kb on - strandat 3606.452 kb on - strandat 3606.752 kb on + strand, within Shew_3036at 3606.888 kb on + strand, within Shew_3036at 3606.888 kb on + strand, within Shew_3036at 3606.896 kb on - strand, within Shew_3036at 3607.283 kb on - strand, within Shew_3036at 3607.424 kb on + strandat 3607.424 kb on + strandat 3607.448 kb on - strand, within Shew_3037at 3607.448 kb on - strand, within Shew_3037at 3607.931 kb on - strand, within Shew_3037at 3607.945 kb on + strand, within Shew_3037at 3607.978 kb on + strand, within Shew_3037at 3608.003 kb on + strand, within Shew_3037at 3608.020 kb on - strand, within Shew_3037at 3608.106 kb on + strand, within Shew_3037at 3608.268 kb on - strandat 3608.690 kb on + strand, within Shew_3038at 3608.698 kb on - strand, within Shew_3038at 3608.912 kb on - strand, within Shew_3038at 3608.971 kb on + strand, within Shew_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,606,414 - -2.1
3,606,452 - -0.0
3,606,752 + Shew_3036 0.26 +0.4
3,606,888 + Shew_3036 0.42 -1.5
3,606,888 + Shew_3036 0.42 +0.2
3,606,896 - Shew_3036 0.43 -0.6
3,607,283 - Shew_3036 0.90 +0.3
3,607,424 + +0.6
3,607,424 + +0.8
3,607,448 - Shew_3037 0.10 -0.4
3,607,448 - Shew_3037 0.10 -0.8
3,607,931 - Shew_3037 0.61 -2.5
3,607,945 + Shew_3037 0.62 +0.6
3,607,978 + Shew_3037 0.66 +0.2
3,608,003 + Shew_3037 0.68 -0.4
3,608,020 - Shew_3037 0.70 -0.7
3,608,106 + Shew_3037 0.79 -1.0
3,608,268 - +1.2
3,608,690 + Shew_3038 0.10 -0.1
3,608,698 - Shew_3038 0.11 +1.6
3,608,912 - Shew_3038 0.23 +0.5
3,608,971 + Shew_3038 0.26 +0.3

Or see this region's nucleotide sequence