Strain Fitness in Shewanella loihica PV-4 around Shew_R0101

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2943 and Shew_2944 overlap by 23 nucleotidesShew_2944 and Shew_R0101 are separated by 173 nucleotides Shew_2943: Shew_2943 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 3,482,088 to 3,482,537 _2943 Shew_2944: Shew_2944 - hypothetical protein (RefSeq), at 3,482,515 to 3,482,838 _2944 Shew_R0101: Shew_R0101 - tRNA-Trp (RefSeq), at 3,483,012 to 3,483,088 _R0101 Position (kb) 3483 3484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3482.621 kb on + strand, within Shew_2944at 3482.637 kb on + strand, within Shew_2944at 3482.637 kb on + strand, within Shew_2944at 3482.822 kb on - strandat 3483.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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3,482,621 + Shew_2944 0.33 -1.3
3,482,637 + Shew_2944 0.38 -3.9
3,482,637 + Shew_2944 0.38 -3.3
3,482,822 - -1.3
3,483,797 - -2.3

Or see this region's nucleotide sequence