Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2791 and Shew_2792 are separated by 62 nucleotides Shew_2792 and Shew_2793 are separated by 241 nucleotides
Shew_2791: Shew_2791 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,301,398 to 3,305,078
_2791
Shew_2792: Shew_2792 - phospholipid/glycerol acyltransferase (RefSeq), at 3,305,141 to 3,306,958
_2792
Shew_2793: Shew_2793 - succinyl-diaminopimelate desuccinylase (RefSeq), at 3,307,200 to 3,308,333
_2793
Position (kb)
3305
3306
3307 Strain fitness (log2 ratio)
-1
0
1 at 3304.263 kb on - strand, within Shew_2791 at 3304.436 kb on - strand, within Shew_2791 at 3304.555 kb on + strand, within Shew_2791 at 3304.581 kb on - strand, within Shew_2791 at 3304.732 kb on + strand at 3305.412 kb on + strand, within Shew_2792 at 3305.910 kb on - strand, within Shew_2792 at 3306.079 kb on + strand, within Shew_2792 at 3306.092 kb on + strand, within Shew_2792 at 3306.129 kb on - strand, within Shew_2792 at 3306.426 kb on + strand, within Shew_2792 at 3306.434 kb on - strand, within Shew_2792 at 3306.541 kb on - strand, within Shew_2792 at 3306.562 kb on + strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3307.610 kb on - strand, within Shew_2793 at 3307.726 kb on + strand, within Shew_2793 at 3307.787 kb on + strand, within Shew_2793 at 3307.820 kb on - strand, within Shew_2793 at 3307.870 kb on + strand, within Shew_2793 at 3307.924 kb on - strand, within Shew_2793
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 3,304,263 - Shew_2791 0.78 -0.4 3,304,436 - Shew_2791 0.83 +1.4 3,304,555 + Shew_2791 0.86 -0.1 3,304,581 - Shew_2791 0.86 -0.4 3,304,732 + +0.1 3,305,412 + Shew_2792 0.15 -0.4 3,305,910 - Shew_2792 0.42 +0.6 3,306,079 + Shew_2792 0.52 +0.9 3,306,092 + Shew_2792 0.52 +0.2 3,306,129 - Shew_2792 0.54 +1.0 3,306,426 + Shew_2792 0.71 +1.4 3,306,434 - Shew_2792 0.71 +0.3 3,306,541 - Shew_2792 0.77 -0.4 3,306,562 + Shew_2792 0.78 +0.4 3,306,570 - Shew_2792 0.79 +0.3 3,306,570 - Shew_2792 0.79 -0.2 3,307,610 - Shew_2793 0.36 -0.9 3,307,726 + Shew_2793 0.46 -0.4 3,307,787 + Shew_2793 0.52 -0.3 3,307,820 - Shew_2793 0.55 +0.6 3,307,870 + Shew_2793 0.59 -1.6 3,307,924 - Shew_2793 0.64 +0.5
Or see this region's nucleotide sequence