Strain Fitness in Shewanella loihica PV-4 around Shew_2779

Experiment: Cisplatin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2778 and Shew_2779 are separated by 327 nucleotidesShew_2779 and Shew_2780 are separated by 86 nucleotidesShew_2780 and Shew_2781 are separated by 23 nucleotides Shew_2778: Shew_2778 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,284,738 to 3,287,770 _2778 Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907 _2779 Shew_2780: Shew_2780 - thioesterase superfamily protein (RefSeq), at 3,288,994 to 3,289,434 _2780 Shew_2781: Shew_2781 - diguanylate cyclase/phosphodiesterase (RefSeq), at 3,289,458 to 3,290,954 _2781 Position (kb) 3288 3289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3287.415 kb on + strand, within Shew_2778at 3287.562 kb on - strandat 3287.916 kb on - strandat 3288.391 kb on + strand, within Shew_2779at 3288.783 kb on + strand, within Shew_2779at 3288.791 kb on - strand, within Shew_2779at 3288.882 kb on + strandat 3288.890 kb on - strandat 3288.890 kb on - strandat 3289.075 kb on + strand, within Shew_2780at 3289.603 kb on - strandat 3289.801 kb on + strand, within Shew_2781

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
remove
3,287,415 + Shew_2778 0.88 -0.5
3,287,562 - -0.5
3,287,916 - -1.1
3,288,391 + Shew_2779 0.36 -3.2
3,288,783 + Shew_2779 0.85 -3.5
3,288,791 - Shew_2779 0.86 -1.1
3,288,882 + -0.3
3,288,890 - +0.8
3,288,890 - +1.0
3,289,075 + Shew_2780 0.18 -2.0
3,289,603 - -4.3
3,289,801 + Shew_2781 0.23 +0.6

Or see this region's nucleotide sequence