Strain Fitness in Shewanella loihica PV-4 around Shew_2502

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2501 and Shew_2502 overlap by 26 nucleotidesShew_2502 and Shew_2503 are separated by 104 nucleotides Shew_2501: Shew_2501 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,940,818 to 2,941,831 _2501 Shew_2502: Shew_2502 - ABC transporter-related protein (RefSeq), at 2,941,806 to 2,942,591 _2502 Shew_2503: Shew_2503 - trans-2-enoyl-CoA reductase (RefSeq), at 2,942,696 to 2,943,898 _2503 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2942.093 kb on + strand, within Shew_2502at 2942.093 kb on + strand, within Shew_2502at 2942.585 kb on + strandat 2942.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,942,093 + Shew_2502 0.37 -3.9
2,942,093 + Shew_2502 0.37 -4.1
2,942,585 + -1.2
2,942,593 - +0.2

Or see this region's nucleotide sequence