Strain Fitness in Shewanella loihica PV-4 around Shew_2498

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2497 and Shew_2498 are separated by 87 nucleotidesShew_2498 and Shew_2499 overlap by 1 nucleotides Shew_2497: Shew_2497 - sigma-54 dependent trancsriptional regulator (RefSeq), at 2,936,096 to 2,937,166 _2497 Shew_2498: Shew_2498 - extracellular solute-binding protein (RefSeq), at 2,937,254 to 2,938,897 _2498 Shew_2499: Shew_2499 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,938,897 to 2,939,928 _2499 Position (kb) 2937 2938 2939Strain fitness (log2 ratio) -3 -2 -1 0 1at 2936.436 kb on + strand, within Shew_2497at 2936.436 kb on + strand, within Shew_2497at 2936.444 kb on - strand, within Shew_2497at 2936.517 kb on + strand, within Shew_2497at 2936.810 kb on + strand, within Shew_2497at 2936.961 kb on + strand, within Shew_2497at 2937.207 kb on - strandat 2937.282 kb on - strandat 2938.603 kb on - strand, within Shew_2498at 2939.756 kb on + strand, within Shew_2499

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,936,436 + Shew_2497 0.32 +0.9
2,936,436 + Shew_2497 0.32 +0.9
2,936,444 - Shew_2497 0.32 +0.1
2,936,517 + Shew_2497 0.39 +1.0
2,936,810 + Shew_2497 0.67 +0.3
2,936,961 + Shew_2497 0.81 -0.5
2,937,207 - -1.4
2,937,282 - -0.4
2,938,603 - Shew_2498 0.82 -3.4
2,939,756 + Shew_2499 0.83 -0.4

Or see this region's nucleotide sequence