Strain Fitness in Shewanella loihica PV-4 around Shew_2485

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinG and Shew_2484 are separated by 38 nucleotidesShew_2484 and Shew_2485 overlap by 4 nucleotidesShew_2485 and Shew_2486 are separated by 9 nucleotidesShew_2486 and Shew_2487 are separated by 7 nucleotides Shew_2483: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 2,922,369 to 2,924,441 dinG Shew_2484: Shew_2484 - hypothetical protein (RefSeq), at 2,924,480 to 2,925,253 _2484 Shew_2485: Shew_2485 - primosomal replication protein N'', putative (RefSeq), at 2,925,250 to 2,925,912 _2485 Shew_2486: Shew_2486 - hypothetical protein (RefSeq), at 2,925,922 to 2,926,611 _2486 Shew_2487: Shew_2487 - histone deacetylase superfamily protein (RefSeq), at 2,926,619 to 2,927,521 _2487 Position (kb) 2925 2926Strain fitness (log2 ratio) -2 -1 0 1at 2925.232 kb on + strandat 2926.763 kb on - strand, within Shew_2487at 2926.770 kb on + strand, within Shew_2487

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,925,232 + -2.0
2,926,763 - Shew_2487 0.16 -0.5
2,926,770 + Shew_2487 0.17 +0.2

Or see this region's nucleotide sequence