Strain Fitness in Shewanella loihica PV-4 around Shew_2476

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2474 and Shew_2475 are separated by 1 nucleotidesShew_2475 and Shew_2476 are separated by 13 nucleotidesShew_2476 and Shew_2477 overlap by 1 nucleotides Shew_2474: Shew_2474 - TonB family protein (RefSeq), at 2,909,622 to 2,910,239 _2474 Shew_2475: Shew_2475 - biopolymer transport protein ExbD/TolR (RefSeq), at 2,910,241 to 2,910,645 _2475 Shew_2476: Shew_2476 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,910,659 to 2,911,186 _2476 Shew_2477: Shew_2477 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,911,186 to 2,912,541 _2477 Position (kb) 2910 2911 2912Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2910.541 kb on + strand, within Shew_2475at 2910.877 kb on - strand, within Shew_2476

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,910,541 + Shew_2475 0.74 -1.4
2,910,877 - Shew_2476 0.41 -5.4

Or see this region's nucleotide sequence