Strain Fitness in Shewanella loihica PV-4 around Shew_2368

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2366 and Shew_2367 are separated by 102 nucleotidesShew_2367 and Shew_2368 are separated by 138 nucleotidesShew_2368 and Shew_2369 are separated by 0 nucleotides Shew_2366: Shew_2366 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,767,400 to 2,768,467 _2366 Shew_2367: Shew_2367 - hypothetical protein (RefSeq), at 2,768,570 to 2,769,160 _2367 Shew_2368: Shew_2368 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 2,769,299 to 2,769,979 _2368 Shew_2369: Shew_2369 - cyclic nucleotide-binding protein (RefSeq), at 2,769,980 to 2,771,827 _2369 Position (kb) 2769 2770Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2768.565 kb on - strandat 2768.668 kb on + strand, within Shew_2367at 2768.880 kb on - strand, within Shew_2367at 2768.994 kb on + strand, within Shew_2367at 2769.181 kb on + strandat 2769.189 kb on - strandat 2770.041 kb on - strandat 2770.534 kb on - strand, within Shew_2369

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,768,565 - -2.7
2,768,668 + Shew_2367 0.17 +3.4
2,768,880 - Shew_2367 0.52 -0.6
2,768,994 + Shew_2367 0.72 +0.5
2,769,181 + -0.4
2,769,189 - +0.2
2,770,041 - +0.6
2,770,534 - Shew_2369 0.30 -1.7

Or see this region's nucleotide sequence