Strain Fitness in Shewanella loihica PV-4 around Shew_2357

Experiment: Cisplatin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_R0085 and Shew_2357 are separated by 663 nucleotidesShew_2357 and Shew_2358 are separated by 173 nucleotides Shew_R0085: Shew_R0085 - 16S ribosomal RNA (RefSeq), at 2,755,324 to 2,756,880 _R0085 Shew_2357: Shew_2357 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 2,757,544 to 2,758,098 _2357 Shew_2358: Shew_2358 - peptidase M24 (RefSeq), at 2,758,272 to 2,759,591 _2358 Position (kb) 2757 2758 2759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2757.219 kb on + strandat 2757.361 kb on + strandat 2757.491 kb on + strandat 2757.491 kb on + strandat 2757.719 kb on - strand, within Shew_2357at 2757.721 kb on + strand, within Shew_2357at 2758.267 kb on - strandat 2758.457 kb on + strand, within Shew_2358at 2758.465 kb on - strand, within Shew_2358at 2758.705 kb on - strand, within Shew_2358at 2758.830 kb on + strand, within Shew_2358at 2759.026 kb on - strand, within Shew_2358

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
remove
2,757,219 + -2.3
2,757,361 + -0.1
2,757,491 + +1.4
2,757,491 + -0.7
2,757,719 - Shew_2357 0.32 -1.9
2,757,721 + Shew_2357 0.32 -2.9
2,758,267 - -1.0
2,758,457 + Shew_2358 0.14 +0.1
2,758,465 - Shew_2358 0.15 +2.4
2,758,705 - Shew_2358 0.33 -0.5
2,758,830 + Shew_2358 0.42 +0.7
2,759,026 - Shew_2358 0.57 +0.3

Or see this region's nucleotide sequence