Strain Fitness in Shewanella loihica PV-4 around Shew_2356

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2355 and Shew_2356 are separated by 88 nucleotidesShew_2356 and Shew_R0081 are separated by 760 nucleotides Shew_2355: Shew_2355 - hypothetical protein (RefSeq), at 2,748,704 to 2,749,474 _2355 Shew_2356: Shew_2356 - patatin (RefSeq), at 2,749,563 to 2,750,600 _2356 Shew_R0081: Shew_R0081 - 5S ribosomal RNA (RefSeq), at 2,751,361 to 2,751,492 _R0081 Position (kb) 2749 2750 2751Strain fitness (log2 ratio) -2 -1 0 1 2at 2748.929 kb on - strand, within Shew_2355at 2749.819 kb on - strand, within Shew_2356at 2750.188 kb on + strand, within Shew_2356at 2750.613 kb on - strandat 2751.535 kb on - strandat 2751.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,748,929 - Shew_2355 0.29 -0.2
2,749,819 - Shew_2356 0.25 +0.9
2,750,188 + Shew_2356 0.60 +1.8
2,750,613 - -2.7
2,751,535 - +0.7
2,751,556 - -0.9

Or see this region's nucleotide sequence