Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2321 and Shew_2322 are separated by 344 nucleotides Shew_2322 and Shew_2323 are separated by 108 nucleotides Shew_2323 and Shew_2324 are separated by 316 nucleotides
Shew_2321: Shew_2321 - inositol monophosphatase (RefSeq), at 2,716,213 to 2,717,016
_2321
Shew_2322: Shew_2322 - NnrS family protein (RefSeq), at 2,717,361 to 2,718,533
_2322
Shew_2323: Shew_2323 - phosphate-starvation-inducible E (RefSeq), at 2,718,642 to 2,719,046
_2323
Shew_2324: Shew_2324 - type IV pilus assembly PilZ (RefSeq), at 2,719,363 to 2,719,665
_2324
Position (kb)
2717
2718
2719 Strain fitness (log2 ratio)
-1
0
1
2 at 2717.445 kb on + strand at 2717.448 kb on + strand at 2717.621 kb on - strand, within Shew_2322 at 2718.206 kb on - strand, within Shew_2322 at 2718.321 kb on + strand, within Shew_2322 at 2718.411 kb on - strand, within Shew_2322 at 2718.763 kb on - strand, within Shew_2323 at 2718.786 kb on + strand, within Shew_2323 at 2719.183 kb on - strand at 2719.464 kb on + strand, within Shew_2324
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 2,717,445 + -0.3 2,717,448 + +2.2 2,717,621 - Shew_2322 0.22 +0.8 2,718,206 - Shew_2322 0.72 -0.3 2,718,321 + Shew_2322 0.82 +0.7 2,718,411 - Shew_2322 0.90 +0.5 2,718,763 - Shew_2323 0.30 +0.5 2,718,786 + Shew_2323 0.36 +0.6 2,719,183 - -0.0 2,719,464 + Shew_2324 0.33 -1.2
Or see this region's nucleotide sequence