Strain Fitness in Shewanella loihica PV-4 around Shew_2252
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,630,839 | + | Shew_2251 | 0.44 | +0.1 | |
2,630,879 | + | Shew_2251 | 0.47 | +0.5 | |
2,630,961 | + | Shew_2251 | 0.52 | +0.2 | |
2,630,961 | + | Shew_2251 | 0.52 | +1.1 | |
2,631,054 | + | Shew_2251 | 0.58 | +1.3 | |
2,631,069 | - | Shew_2251 | 0.59 | -0.6 | |
2,631,123 | - | Shew_2251 | 0.62 | -0.4 | |
2,631,269 | + | Shew_2251 | 0.72 | +0.7 | |
2,631,381 | - | Shew_2251 | 0.79 | -1.0 | |
2,631,381 | - | Shew_2251 | 0.79 | +0.2 | |
2,632,130 | + | Shew_2252 | 0.70 | -2.2 | |
2,632,578 | + | Shew_2253 | 0.25 | +0.1 | |
2,632,642 | + | Shew_2253 | 0.31 | +0.3 | |
2,632,692 | - | Shew_2253 | 0.36 | -0.7 | |
2,633,268 | + | +0.2 |
Or see this region's nucleotide sequence