Strain Fitness in Shewanella loihica PV-4 around Shew_2252

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2251 and Shew_2252 overlap by 4 nucleotidesShew_2252 and Shew_2253 are separated by 2 nucleotides Shew_2251: Shew_2251 - anthranilate synthase component I (RefSeq), at 2,630,153 to 2,631,706 _2251 Shew_2252: Shew_2252 - anthranilate synthase component II (RefSeq), at 2,631,703 to 2,632,311 _2252 Shew_2253: Shew_2253 - anthranilate phosphoribosyltransferase (RefSeq), at 2,632,314 to 2,633,363 _2253 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -2 -1 0 1at 2630.839 kb on + strand, within Shew_2251at 2630.879 kb on + strand, within Shew_2251at 2630.961 kb on + strand, within Shew_2251at 2630.961 kb on + strand, within Shew_2251at 2631.054 kb on + strand, within Shew_2251at 2631.069 kb on - strand, within Shew_2251at 2631.123 kb on - strand, within Shew_2251at 2631.269 kb on + strand, within Shew_2251at 2631.381 kb on - strand, within Shew_2251at 2631.381 kb on - strand, within Shew_2251at 2632.130 kb on + strand, within Shew_2252at 2632.578 kb on + strand, within Shew_2253at 2632.642 kb on + strand, within Shew_2253at 2632.692 kb on - strand, within Shew_2253at 2633.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,630,839 + Shew_2251 0.44 +0.1
2,630,879 + Shew_2251 0.47 +0.5
2,630,961 + Shew_2251 0.52 +0.2
2,630,961 + Shew_2251 0.52 +1.1
2,631,054 + Shew_2251 0.58 +1.3
2,631,069 - Shew_2251 0.59 -0.6
2,631,123 - Shew_2251 0.62 -0.4
2,631,269 + Shew_2251 0.72 +0.7
2,631,381 - Shew_2251 0.79 -1.0
2,631,381 - Shew_2251 0.79 +0.2
2,632,130 + Shew_2252 0.70 -2.2
2,632,578 + Shew_2253 0.25 +0.1
2,632,642 + Shew_2253 0.31 +0.3
2,632,692 - Shew_2253 0.36 -0.7
2,633,268 + +0.2

Or see this region's nucleotide sequence