Strain Fitness in Shewanella loihica PV-4 around Shew_2217

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpheS and Shew_2217 are separated by 365 nucleotidesShew_2217 and Shew_2218 are separated by 129 nucleotides Shew_2216: pheS - phenylalanyl-tRNA synthetase subunit alpha (RefSeq), at 2,585,997 to 2,587,007 pheS Shew_2217: Shew_2217 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,587,373 to 2,588,875 _2217 Shew_2218: Shew_2218 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 2,589,005 to 2,591,644 _2218 Position (kb) 2587 2588 2589Strain fitness (log2 ratio) -1 0 1at 2587.524 kb on + strand, within Shew_2217at 2587.532 kb on - strand, within Shew_2217at 2587.625 kb on + strand, within Shew_2217at 2588.107 kb on - strand, within Shew_2217at 2588.165 kb on - strand, within Shew_2217at 2588.223 kb on + strand, within Shew_2217at 2589.835 kb on - strand, within Shew_2218

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,587,524 + Shew_2217 0.10 -1.2
2,587,532 - Shew_2217 0.11 -0.3
2,587,625 + Shew_2217 0.17 +0.4
2,588,107 - Shew_2217 0.49 -0.0
2,588,165 - Shew_2217 0.53 -0.9
2,588,223 + Shew_2217 0.57 -0.1
2,589,835 - Shew_2218 0.31 -1.4

Or see this region's nucleotide sequence