Strain Fitness in Shewanella loihica PV-4 around Shew_2174

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2173 and Shew_2174 are separated by 89 nucleotidesShew_2174 and nhaB are separated by 298 nucleotides Shew_2173: Shew_2173 - hypothetical protein (RefSeq), at 2,529,518 to 2,533,417 _2173 Shew_2174: Shew_2174 - fatty acid metabolism regulator (RefSeq), at 2,533,507 to 2,534,268 _2174 Shew_2175: nhaB - sodium/proton antiporter (RefSeq), at 2,534,567 to 2,536,162 nhaB Position (kb) 2533 2534 2535Strain fitness (log2 ratio) -2 -1 0 1at 2532.816 kb on - strand, within Shew_2173at 2534.117 kb on - strand, within Shew_2174at 2534.310 kb on + strandat 2534.470 kb on - strandat 2534.510 kb on - strandat 2534.806 kb on - strand, within nhaBat 2534.981 kb on + strand, within nhaBat 2535.139 kb on + strand, within nhaB

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,532,816 - Shew_2173 0.85 -2.4
2,534,117 - Shew_2174 0.80 -2.7
2,534,310 + +0.5
2,534,470 - +1.4
2,534,510 - -2.4
2,534,806 - nhaB Shew_2175 0.15 +1.0
2,534,981 + nhaB Shew_2175 0.26 +0.8
2,535,139 + nhaB Shew_2175 0.36 +0.4

Or see this region's nucleotide sequence