Strain Fitness in Shewanella loihica PV-4 around Shew_2156

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2155 and Shew_2156 are separated by 126 nucleotidesShew_2156 and Shew_2157 are separated by 40 nucleotides Shew_2155: Shew_2155 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,499,904 to 2,500,944 _2155 Shew_2156: Shew_2156 - lysine exporter protein LysE/YggA (RefSeq), at 2,501,071 to 2,501,688 _2156 Shew_2157: Shew_2157 - hypothetical protein (RefSeq), at 2,501,729 to 2,503,096 _2157 Position (kb) 2501 2502Strain fitness (log2 ratio) -1 0 1at 2500.606 kb on - strand, within Shew_2155at 2500.611 kb on - strand, within Shew_2155at 2501.139 kb on - strand, within Shew_2156at 2501.177 kb on - strand, within Shew_2156at 2501.450 kb on - strand, within Shew_2156at 2502.218 kb on + strand, within Shew_2157at 2502.525 kb on - strand, within Shew_2157

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,500,606 - Shew_2155 0.67 +0.1
2,500,611 - Shew_2155 0.68 -1.4
2,501,139 - Shew_2156 0.11 +0.1
2,501,177 - Shew_2156 0.17 -1.3
2,501,450 - Shew_2156 0.61 -0.0
2,502,218 + Shew_2157 0.36 +1.5
2,502,525 - Shew_2157 0.58 +1.6

Or see this region's nucleotide sequence