Strain Fitness in Shewanella loihica PV-4 around Shew_2154

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2153 and Shew_2154 are separated by 154 nucleotidesShew_2154 and Shew_2155 are separated by 91 nucleotides Shew_2153: Shew_2153 - LysR family transcriptional regulator (RefSeq), at 2,497,592 to 2,498,497 _2153 Shew_2154: Shew_2154 - homogentisate 1,2-dioxygenase (RefSeq), at 2,498,652 to 2,499,812 _2154 Shew_2155: Shew_2155 - 4-hydroxyphenylpyruvate dioxygenase (RefSeq), at 2,499,904 to 2,500,944 _2155 Position (kb) 2498 2499 2500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2497.673 kb on - strandat 2497.973 kb on - strand, within Shew_2153at 2498.952 kb on + strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154at 2499.669 kb on - strand, within Shew_2154at 2499.669 kb on - strand, within Shew_2154at 2499.807 kb on + strandat 2500.606 kb on - strand, within Shew_2155at 2500.611 kb on - strand, within Shew_2155

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,497,673 - -0.8
2,497,973 - Shew_2153 0.42 +1.8
2,498,952 + Shew_2154 0.26 -0.4
2,498,960 - Shew_2154 0.27 -3.6
2,498,960 - Shew_2154 0.27 +0.6
2,498,960 - Shew_2154 0.27 +1.5
2,499,669 - Shew_2154 0.88 -0.4
2,499,669 - Shew_2154 0.88 -1.8
2,499,807 + -0.5
2,500,606 - Shew_2155 0.67 +0.1
2,500,611 - Shew_2155 0.68 -1.4

Or see this region's nucleotide sequence