Strain Fitness in Shewanella loihica PV-4 around Shew_2133
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,478,301 | - | Shew_2132 | 0.28 | +1.3 | |
2,478,399 | + | Shew_2132 | 0.38 | -0.5 | |
2,478,594 | + | Shew_2132 | 0.59 | -0.3 | |
2,480,523 | + | Shew_2134 | 0.72 | +0.6 | |
2,480,531 | - | Shew_2134 | 0.74 | +0.6 | |
2,480,594 | - | Shew_2134 | 0.88 | +1.2 | |
2,480,655 | - | +0.1 | |||
2,480,760 | - | -0.0 | |||
2,480,809 | - | -1.0 | |||
2,480,907 | - | -0.3 | |||
2,480,951 | - | +0.1 | |||
2,480,974 | + | +0.1 | |||
2,480,974 | + | -0.1 | |||
2,481,076 | - | -0.2 |
Or see this region's nucleotide sequence