Strain Fitness in Shewanella loihica PV-4 around Shew_2091

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2089 and Shew_2090 are separated by 3 nucleotidesShew_2090 and thiH are separated by 102 nucleotidesthiH and Shew_2092 are separated by 4 nucleotidesShew_2092 and Shew_2093 are separated by 1 nucleotidesShew_2093 and Shew_2094 overlap by 8 nucleotides Shew_2089: Shew_2089 - SrpA-related protein (RefSeq), at 2,416,453 to 2,417,850 _2089 Shew_2090: Shew_2090 - methyl-accepting chemotaxis protein (RefSeq), at 2,417,854 to 2,418,123 _2090 Shew_2091: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,418,226 to 2,419,344 thiH Shew_2092: Shew_2092 - thiazole biosynthesis family protein (RefSeq), at 2,419,349 to 2,420,122 _2092 Shew_2093: Shew_2093 - thiamine biosynthesis protein ThiS (RefSeq), at 2,420,124 to 2,420,333 _2093 Shew_2094: Shew_2094 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,420,326 to 2,421,174 _2094 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -1 0 1at 2417.296 kb on - strand, within Shew_2089at 2418.052 kb on + strand, within Shew_2090at 2419.000 kb on - strand, within thiHat 2419.000 kb on - strand, within thiHat 2419.930 kb on + strand, within Shew_2092

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,417,296 - Shew_2089 0.60 -0.2
2,418,052 + Shew_2090 0.73 -0.3
2,419,000 - thiH Shew_2091 0.69 -0.3
2,419,000 - thiH Shew_2091 0.69 +0.7
2,419,930 + Shew_2092 0.75 +0.4

Or see this region's nucleotide sequence