Strain Fitness in Shewanella loihica PV-4 around Shew_2087

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2086 and Shew_2087 overlap by 26 nucleotidesShew_2087 and Shew_2088 are separated by 15 nucleotidesShew_2088 and Shew_2089 overlap by 24 nucleotides Shew_2086: Shew_2086 - hypothetical protein (RefSeq), at 2,412,648 to 2,414,423 _2086 Shew_2087: Shew_2087 - hypothetical protein (RefSeq), at 2,414,398 to 2,415,549 _2087 Shew_2088: Shew_2088 - LysR family transcriptional regulator (RefSeq), at 2,415,565 to 2,416,476 _2088 Shew_2089: Shew_2089 - SrpA-related protein (RefSeq), at 2,416,453 to 2,417,850 _2089 Position (kb) 2414 2415 2416Strain fitness (log2 ratio) -3 -2 -1 0 1at 2414.038 kb on - strand, within Shew_2086at 2414.162 kb on - strand, within Shew_2086at 2414.281 kb on - strandat 2414.332 kb on - strandat 2415.041 kb on - strand, within Shew_2087at 2415.351 kb on - strand, within Shew_2087at 2415.385 kb on + strand, within Shew_2087at 2415.492 kb on + strandat 2416.197 kb on - strand, within Shew_2088at 2416.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,414,038 - Shew_2086 0.78 -3.5
2,414,162 - Shew_2086 0.85 -1.1
2,414,281 - -2.0
2,414,332 - -2.9
2,415,041 - Shew_2087 0.56 -2.6
2,415,351 - Shew_2087 0.83 -2.5
2,415,385 + Shew_2087 0.86 -0.9
2,415,492 + -1.5
2,416,197 - Shew_2088 0.69 -2.5
2,416,450 + -1.5

Or see this region's nucleotide sequence