Strain Fitness in Shewanella loihica PV-4 around Shew_2085

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2084 and Shew_2085 are separated by 2 nucleotidesShew_2085 and Shew_2086 overlap by 38 nucleotides Shew_2084: Shew_2084 - gonadoliberin III-related protein (RefSeq), at 2,410,221 to 2,411,726 _2084 Shew_2085: Shew_2085 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,411,729 to 2,412,685 _2085 Shew_2086: Shew_2086 - hypothetical protein (RefSeq), at 2,412,648 to 2,414,423 _2086 Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -1 0 1at 2412.259 kb on + strand, within Shew_2085at 2412.420 kb on + strand, within Shew_2085

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,412,259 + Shew_2085 0.55 -1.6
2,412,420 + Shew_2085 0.72 -1.5

Or see this region's nucleotide sequence