Strain Fitness in Shewanella loihica PV-4 around Shew_1951

Experiment: Cisplatin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1950 and Shew_1951 are separated by 112 nucleotidesShew_1951 and Shew_1952 are separated by 389 nucleotides Shew_1950: Shew_1950 - phosphoserine aminotransferase (RefSeq), at 2,254,562 to 2,255,656 _1950 Shew_1951: Shew_1951 - aromatic amino acid aminotransferase (RefSeq), at 2,255,769 to 2,256,959 _1951 Shew_1952: Shew_1952 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,257,349 to 2,258,629 _1952 Position (kb) 2255 2256 2257Strain fitness (log2 ratio) -3 -2 -1 0 1at 2256.127 kb on + strand, within Shew_1951at 2256.135 kb on - strand, within Shew_1951at 2256.145 kb on - strand, within Shew_1951at 2256.523 kb on + strand, within Shew_1951at 2256.986 kb on - strandat 2257.013 kb on - strandat 2257.892 kb on - strand, within Shew_1952

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
remove
2,256,127 + Shew_1951 0.30 +0.3
2,256,135 - Shew_1951 0.31 -2.1
2,256,145 - Shew_1951 0.32 -2.2
2,256,523 + Shew_1951 0.63 -2.8
2,256,986 - -1.1
2,257,013 - -0.2
2,257,892 - Shew_1952 0.42 +0.6

Or see this region's nucleotide sequence