Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1895 and Shew_1896 overlap by 11 nucleotides Shew_1896 and Shew_1897 are separated by 160 nucleotides Shew_1897 and Shew_1898 are separated by 23 nucleotides
Shew_1895: Shew_1895 - redoxin domain-containing protein (RefSeq), at 2,189,873 to 2,190,442
_1895
Shew_1896: Shew_1896 - putative lipoprotein (RefSeq), at 2,190,432 to 2,190,650
_1896
Shew_1897: Shew_1897 - hypothetical protein (RefSeq), at 2,190,811 to 2,192,133
_1897
Shew_1898: Shew_1898 - ApbE family lipoprotein (RefSeq), at 2,192,157 to 2,193,149
_1898
Position (kb)
2190
2191
2192
2193 Strain fitness (log2 ratio)
-2
-1
0
1 at 2190.621 kb on - strand, within Shew_1896 at 2190.672 kb on + strand at 2191.187 kb on + strand, within Shew_1897 at 2191.534 kb on - strand, within Shew_1897 at 2191.576 kb on - strand, within Shew_1897 at 2191.905 kb on - strand, within Shew_1897 at 2191.938 kb on + strand, within Shew_1897 at 2192.435 kb on - strand, within Shew_1898 at 2192.656 kb on - strand, within Shew_1898 at 2192.752 kb on + strand, within Shew_1898
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 2,190,621 - Shew_1896 0.86 -0.9 2,190,672 + -1.0 2,191,187 + Shew_1897 0.28 +0.5 2,191,534 - Shew_1897 0.55 -0.5 2,191,576 - Shew_1897 0.58 -1.8 2,191,905 - Shew_1897 0.83 +0.3 2,191,938 + Shew_1897 0.85 +0.9 2,192,435 - Shew_1898 0.28 -1.2 2,192,656 - Shew_1898 0.50 -0.1 2,192,752 + Shew_1898 0.60 +0.4
Or see this region's nucleotide sequence