Strain Fitness in Shewanella loihica PV-4 around Shew_1871

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1870 and Shew_1871 overlap by 4 nucleotidesShew_1871 and Shew_1872 are separated by 95 nucleotides Shew_1870: Shew_1870 - LacI family transcription regulator (RefSeq), at 2,148,619 to 2,149,647 _1870 Shew_1871: Shew_1871 - DNA polymerase III, epsilon subunit (RefSeq), at 2,149,644 to 2,150,258 _1871 Shew_1872: Shew_1872 - elongation factor G (RefSeq), at 2,150,354 to 2,152,438 _1872 Position (kb) 2149 2150 2151Strain fitness (log2 ratio) -1 0 1at 2148.741 kb on - strand, within Shew_1870at 2148.811 kb on - strand, within Shew_1870at 2148.935 kb on - strand, within Shew_1870at 2148.950 kb on - strand, within Shew_1870at 2150.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,148,741 - Shew_1870 0.12 +1.1
2,148,811 - Shew_1870 0.19 +0.3
2,148,935 - Shew_1870 0.31 +0.4
2,148,950 - Shew_1870 0.32 +0.7
2,150,213 + -0.3

Or see this region's nucleotide sequence