Strain Fitness in Shewanella loihica PV-4 around Shew_1825

Experiment: Cisplatin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1823 and Shew_1824 are separated by 224 nucleotidesShew_1824 and uvrC are separated by 31 nucleotidesuvrC and Shew_1826 are separated by 47 nucleotidesShew_1826 and Shew_R0061 are separated by 140 nucleotidesShew_R0061 and Shew_R0062 are separated by 12 nucleotidesShew_R0062 and Shew_R0063 are separated by 39 nucleotides Shew_1823: Shew_1823 - putative AcnD-accessory protein PrpF (RefSeq), at 2,097,828 to 2,098,997 _1823 Shew_1824: Shew_1824 - response regulator (RefSeq), at 2,099,222 to 2,099,911 _1824 Shew_1825: uvrC - excinuclease ABC subunit C (RefSeq), at 2,099,943 to 2,101,772 uvrC Shew_1826: Shew_1826 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (RefSeq), at 2,101,820 to 2,102,377 _1826 Shew_R0061: Shew_R0061 - tRNA-Gly (RefSeq), at 2,102,518 to 2,102,593 _R0061 Shew_R0062: Shew_R0062 - tRNA-Cys (RefSeq), at 2,102,606 to 2,102,679 _R0062 Shew_R0063: Shew_R0063 - tRNA-Leu (RefSeq), at 2,102,719 to 2,102,805 _R0063 Position (kb) 2099 2100 2101 2102Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2099.961 kb on - strandat 2100.461 kb on + strand, within uvrCat 2100.544 kb on + strand, within uvrCat 2100.978 kb on + strand, within uvrCat 2101.073 kb on + strand, within uvrCat 2101.496 kb on - strand, within uvrC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
remove
2,099,961 - -3.6
2,100,461 + uvrC Shew_1825 0.28 -6.0
2,100,544 + uvrC Shew_1825 0.33 -5.5
2,100,978 + uvrC Shew_1825 0.57 -6.4
2,101,073 + uvrC Shew_1825 0.62 -3.6
2,101,496 - uvrC Shew_1825 0.85 -4.4

Or see this region's nucleotide sequence