Strain Fitness in Shewanella loihica PV-4 around Shew_1823

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1822 and Shew_1823 are separated by 58 nucleotidesShew_1823 and Shew_1824 are separated by 224 nucleotidesShew_1824 and uvrC are separated by 31 nucleotides Shew_1822: Shew_1822 - aconitate hydratase (RefSeq), at 2,095,181 to 2,097,769 _1822 Shew_1823: Shew_1823 - putative AcnD-accessory protein PrpF (RefSeq), at 2,097,828 to 2,098,997 _1823 Shew_1824: Shew_1824 - response regulator (RefSeq), at 2,099,222 to 2,099,911 _1824 Shew_1825: uvrC - excinuclease ABC subunit C (RefSeq), at 2,099,943 to 2,101,772 uvrC Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -3 -2 -1 0 1at 2098.738 kb on - strand, within Shew_1823at 2099.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,098,738 - Shew_1823 0.78 -2.1
2,099,961 - -3.6

Or see this region's nucleotide sequence