Strain Fitness in Shewanella loihica PV-4 around Shew_1763

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1761 and Shew_1762 overlap by 20 nucleotidesShew_1762 and Shew_1763 are separated by 11 nucleotidesShew_1763 and Shew_1764 are separated by 10 nucleotides Shew_1761: Shew_1761 - hypothetical protein (RefSeq), at 2,012,673 to 2,014,460 _1761 Shew_1762: Shew_1762 - hydrogenase expression/formation protein (RefSeq), at 2,014,441 to 2,015,004 _1762 Shew_1763: Shew_1763 - Ni/Fe-hydrogenase, b-type cytochrome subunit (RefSeq), at 2,015,016 to 2,015,687 _1763 Shew_1764: Shew_1764 - nickel-dependent hydrogenase, large subunit (RefSeq), at 2,015,698 to 2,017,404 _1764 Position (kb) 2015 2016Strain fitness (log2 ratio) -1 0 1at 2014.472 kb on - strandat 2014.705 kb on + strand, within Shew_1762at 2014.787 kb on - strand, within Shew_1762at 2015.416 kb on - strand, within Shew_1763at 2015.416 kb on - strand, within Shew_1763at 2015.423 kb on + strand, within Shew_1763at 2015.534 kb on + strand, within Shew_1763at 2015.542 kb on - strand, within Shew_1763at 2015.847 kb on - strandat 2016.439 kb on + strand, within Shew_1764at 2016.459 kb on + strand, within Shew_1764

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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2,014,472 - -0.9
2,014,705 + Shew_1762 0.47 -0.5
2,014,787 - Shew_1762 0.61 -0.5
2,015,416 - Shew_1763 0.60 +0.3
2,015,416 - Shew_1763 0.60 -0.3
2,015,423 + Shew_1763 0.61 +0.8
2,015,534 + Shew_1763 0.77 +0.1
2,015,542 - Shew_1763 0.78 +0.0
2,015,847 - +1.0
2,016,439 + Shew_1764 0.43 +1.4
2,016,459 + Shew_1764 0.45 +0.2

Or see this region's nucleotide sequence