Strain Fitness in Shewanella loihica PV-4 around Shew_1716

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1715 and Shew_1716 are separated by 6 nucleotidesShew_1716 and Shew_1717 are separated by 30 nucleotidesShew_1717 and Shew_1718 are separated by 163 nucleotides Shew_1715: Shew_1715 - peptide synthase (RefSeq), at 1,967,988 to 1,969,679 _1715 Shew_1716: Shew_1716 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 1,969,686 to 1,970,807 _1716 Shew_1717: Shew_1717 - globin (RefSeq), at 1,970,838 to 1,971,260 _1717 Shew_1718: Shew_1718 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq), at 1,971,424 to 1,972,764 _1718 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -2 -1 0 1at 1968.970 kb on - strand, within Shew_1715at 1970.054 kb on + strand, within Shew_1716at 1970.346 kb on + strand, within Shew_1716at 1970.808 kb on + strandat 1970.958 kb on + strand, within Shew_1717at 1971.001 kb on + strand, within Shew_1717at 1971.141 kb on + strand, within Shew_1717at 1971.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,968,970 - Shew_1715 0.58 -0.9
1,970,054 + Shew_1716 0.33 -2.2
1,970,346 + Shew_1716 0.59 -2.3
1,970,808 + +0.3
1,970,958 + Shew_1717 0.28 +0.3
1,971,001 + Shew_1717 0.39 -1.0
1,971,141 + Shew_1717 0.72 -2.5
1,971,263 - +0.3

Or see this region's nucleotide sequence