Strain Fitness in Shewanella loihica PV-4 around Shew_1679

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1677 and Shew_1678 are separated by 72 nucleotidesShew_1678 and Shew_1679 are separated by 60 nucleotidesShew_1679 and Shew_1680 are separated by 128 nucleotidesShew_1680 and Shew_1681 are separated by 218 nucleotides Shew_1677: Shew_1677 - leucyl aminopeptidase (RefSeq), at 1,928,104 to 1,929,465 _1677 Shew_1678: Shew_1678 - hypothetical protein (RefSeq), at 1,929,538 to 1,929,966 _1678 Shew_1679: Shew_1679 - TetR family transcriptional regulator (RefSeq), at 1,930,027 to 1,930,584 _1679 Shew_1680: Shew_1680 - HPP family protein+B94 (RefSeq), at 1,930,713 to 1,931,183 _1680 Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892 _1681 Position (kb) 1930 1931Strain fitness (log2 ratio) -2 -1 0 1at 1929.031 kb on - strand, within Shew_1677at 1929.379 kb on - strandat 1929.379 kb on - strandat 1929.420 kb on + strandat 1929.656 kb on - strand, within Shew_1678at 1930.090 kb on - strand, within Shew_1679at 1930.370 kb on + strand, within Shew_1679at 1930.689 kb on + strandat 1931.364 kb on + strandat 1931.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,929,031 - Shew_1677 0.68 +0.5
1,929,379 - +0.9
1,929,379 - -0.3
1,929,420 + +0.9
1,929,656 - Shew_1678 0.28 +0.5
1,930,090 - Shew_1679 0.11 -1.5
1,930,370 + Shew_1679 0.61 -1.8
1,930,689 + +0.5
1,931,364 + +0.5
1,931,420 - -0.3

Or see this region's nucleotide sequence