Strain Fitness in Shewanella loihica PV-4 around Shew_1616

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1615 and Shew_1616 overlap by 4 nucleotidesShew_1616 and Shew_1617 are separated by 56 nucleotidesShew_1617 and Shew_1618 are separated by 99 nucleotides Shew_1615: Shew_1615 - ABC transporter-related protein (RefSeq), at 1,846,913 to 1,847,818 _1615 Shew_1616: Shew_1616 - hypothetical protein (RefSeq), at 1,847,815 to 1,848,669 _1616 Shew_1617: Shew_1617 - hypothetical protein (RefSeq), at 1,848,726 to 1,849,373 _1617 Shew_1618: Shew_1618 - hypothetical protein (RefSeq), at 1,849,473 to 1,850,306 _1618 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -3 -2 -1 0 1at 1846.816 kb on + strandat 1846.944 kb on - strandat 1847.380 kb on - strand, within Shew_1615at 1847.562 kb on - strand, within Shew_1615at 1847.892 kb on + strandat 1848.020 kb on + strand, within Shew_1616at 1848.035 kb on + strand, within Shew_1616at 1848.615 kb on - strandat 1848.644 kb on - strandat 1848.954 kb on - strand, within Shew_1617at 1849.277 kb on - strand, within Shew_1617

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,846,816 + +0.8
1,846,944 - +0.8
1,847,380 - Shew_1615 0.52 +0.4
1,847,562 - Shew_1615 0.72 -0.0
1,847,892 + +0.2
1,848,020 + Shew_1616 0.24 +1.5
1,848,035 + Shew_1616 0.26 -2.8
1,848,615 - -0.1
1,848,644 - +0.0
1,848,954 - Shew_1617 0.35 -0.3
1,849,277 - Shew_1617 0.85 -2.0

Or see this region's nucleotide sequence