Strain Fitness in Shewanella loihica PV-4 around Shew_1611

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1610 and sbcB are separated by 117 nucleotidessbcB and Shew_1612 are separated by 128 nucleotidesShew_1612 and rrmA are separated by 35 nucleotides Shew_1610: Shew_1610 - cytidine deaminase (RefSeq), at 1,841,674 to 1,842,564 _1610 Shew_1611: sbcB - exonuclease I (RefSeq), at 1,842,682 to 1,844,130 sbcB Shew_1612: Shew_1612 - hypothetical protein (RefSeq), at 1,844,259 to 1,845,077 _1612 Shew_1613: rrmA - 23S rRNA methyltransferase A (RefSeq), at 1,845,113 to 1,845,925 rrmA Position (kb) 1842 1843 1844 1845Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1842.294 kb on + strand, within Shew_1610at 1842.340 kb on - strand, within Shew_1610at 1843.108 kb on + strand, within sbcBat 1843.642 kb on + strand, within sbcBat 1843.642 kb on + strand, within sbcBat 1844.055 kb on - strandat 1844.096 kb on + strandat 1844.096 kb on + strandat 1844.104 kb on - strandat 1844.132 kb on + strandat 1844.269 kb on - strandat 1845.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,842,294 + Shew_1610 0.70 +0.1
1,842,340 - Shew_1610 0.75 +0.3
1,843,108 + sbcB Shew_1611 0.29 -5.7
1,843,642 + sbcB Shew_1611 0.66 -3.8
1,843,642 + sbcB Shew_1611 0.66 -5.4
1,844,055 - -3.6
1,844,096 + -3.3
1,844,096 + -5.1
1,844,104 - -2.5
1,844,132 + -0.1
1,844,269 - +1.5
1,845,067 - -1.5

Or see this region's nucleotide sequence