Strain Fitness in Shewanella loihica PV-4 around Shew_1580

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1578 and Shew_1579 overlap by 4 nucleotidesShew_1579 and Shew_1580 are separated by 17 nucleotidesShew_1580 and Shew_1581 are separated by 6 nucleotidesShew_1581 and Shew_1582 are separated by 44 nucleotides Shew_1578: Shew_1578 - aminodeoxychorismate lyase (RefSeq), at 1,808,244 to 1,809,251 _1578 Shew_1579: Shew_1579 - dTMP kinase (RefSeq), at 1,809,248 to 1,809,880 _1579 Shew_1580: Shew_1580 - DNA polymerase III, delta prime subunit (RefSeq), at 1,809,898 to 1,810,812 _1580 Shew_1581: Shew_1581 - type IV pilus assembly PilZ (RefSeq), at 1,810,819 to 1,811,145 _1581 Shew_1582: Shew_1582 - TatD family hydrolase (RefSeq), at 1,811,190 to 1,811,978 _1582 Position (kb) 1809 1810 1811Strain fitness (log2 ratio) -1 0 1at 1811.310 kb on - strand, within Shew_1582at 1811.360 kb on - strand, within Shew_1582

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,811,310 - Shew_1582 0.15 -0.6
1,811,360 - Shew_1582 0.22 -1.1

Or see this region's nucleotide sequence