Strain Fitness in Shewanella loihica PV-4 around Shew_1505

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1503 and Shew_1504 are separated by 131 nucleotidesShew_1504 and Shew_1505 are separated by 71 nucleotidesShew_1505 and Shew_1506 are separated by 232 nucleotidesShew_1506 and Shew_1507 are separated by 2 nucleotides Shew_1503: Shew_1503 - oxidoreductase FAD-binding subunit (RefSeq), at 1,726,005 to 1,726,997 _1503 Shew_1504: Shew_1504 - GCN5-related N-acetyltransferase (RefSeq), at 1,727,129 to 1,727,560 _1504 Shew_1505: Shew_1505 - hypothetical protein (RefSeq), at 1,727,632 to 1,728,336 _1505 Shew_1506: Shew_1506 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 1,728,569 to 1,728,919 _1506 Shew_1507: Shew_1507 - 5-carboxymethyl-2-hydroxymuconate isomerase (RefSeq), at 1,728,922 to 1,729,269 _1507 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -3 -2 -1 0 1at 1727.004 kb on - strandat 1727.192 kb on + strand, within Shew_1504at 1727.712 kb on - strand, within Shew_1505at 1727.827 kb on - strand, within Shew_1505at 1727.829 kb on + strand, within Shew_1505at 1727.837 kb on - strand, within Shew_1505at 1727.998 kb on - strand, within Shew_1505at 1728.188 kb on - strand, within Shew_1505at 1728.578 kb on + strandat 1728.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,727,004 - +0.4
1,727,192 + Shew_1504 0.15 -2.7
1,727,712 - Shew_1505 0.11 -0.4
1,727,827 - Shew_1505 0.28 -3.7
1,727,829 + Shew_1505 0.28 -2.9
1,727,837 - Shew_1505 0.29 -1.9
1,727,998 - Shew_1505 0.52 -2.0
1,728,188 - Shew_1505 0.79 -2.4
1,728,578 + +0.5
1,728,581 - -0.9

Or see this region's nucleotide sequence