Strain Fitness in Shewanella loihica PV-4 around Shew_1393
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,600,874 | - | Shew_1391 | 0.71 | +1.1 | |
| 1,601,011 | + | +0.3 | |||
| 1,601,019 | - | -1.3 | |||
| 1,601,204 | + | Shew_1392 | 0.13 | -0.3 | |
| 1,601,505 | + | Shew_1392 | 0.87 | +0.2 | |
| 1,601,513 | - | Shew_1392 | 0.89 | +0.7 | |
| 1,601,513 | - | Shew_1392 | 0.89 | -0.8 | |
| 1,601,585 | + | +0.6 | |||
| 1,601,592 | - | -0.8 | |||
| 1,601,854 | + | Shew_1393 | 0.75 | +0.8 | |
| 1,602,194 | - | Shew_1394 | 0.12 | +0.7 | |
| 1,602,289 | - | Shew_1394 | 0.16 | -0.2 | |
| 1,602,835 | + | Shew_1394 | 0.41 | -0.6 |
Or see this region's nucleotide sequence