Strain Fitness in Shewanella loihica PV-4 around Shew_1387

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1386 and Shew_1387 are separated by 93 nucleotidesShew_1387 and Shew_1388 overlap by 8 nucleotidesShew_1388 and Shew_1389 are separated by 46 nucleotides Shew_1386: Shew_1386 - CheA signal transduction histidine kinase (RefSeq), at 1,594,645 to 1,596,885 _1386 Shew_1387: Shew_1387 - chemotaxis-specific methylesterase (RefSeq), at 1,596,979 to 1,598,088 _1387 Shew_1388: Shew_1388 - hypothetical protein (RefSeq), at 1,598,081 to 1,598,704 _1388 Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542 _1389 Position (kb) 1596 1597 1598 1599Strain fitness (log2 ratio) -1 0 1 2at 1596.323 kb on - strand, within Shew_1386at 1596.640 kb on - strand, within Shew_1386at 1596.778 kb on - strandat 1596.912 kb on - strandat 1596.923 kb on + strandat 1597.785 kb on + strand, within Shew_1387at 1598.107 kb on - strandat 1598.169 kb on + strand, within Shew_1388at 1598.902 kb on - strand, within Shew_1389at 1598.985 kb on - strand, within Shew_1389at 1599.078 kb on - strand, within Shew_1389

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,596,323 - Shew_1386 0.75 +0.2
1,596,640 - Shew_1386 0.89 +1.6
1,596,778 - +0.4
1,596,912 - -0.2
1,596,923 + +1.3
1,597,785 + Shew_1387 0.73 +0.5
1,598,107 - +0.1
1,598,169 + Shew_1388 0.14 -1.0
1,598,902 - Shew_1389 0.19 +1.8
1,598,985 - Shew_1389 0.30 -1.3
1,599,078 - Shew_1389 0.41 +1.4

Or see this region's nucleotide sequence