Strain Fitness in Shewanella loihica PV-4 around Shew_1253

Experiment: Cisplatin 1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 1 mg/ml
1,450,593	-				+0.2
1,450,594	-				+0.5
1,450,613	-				-0.3
1,450,620	+				-1.9
1,450,620	+				-2.3
1,450,638	-				-0.2
1,450,688	+				+0.5
1,450,823	-				+0.1
1,450,834	-				-0.6
1,450,881	+		Shew_1252	0.11	+0.6
1,450,918	+		Shew_1252	0.17	+0.2
1,450,918	+		Shew_1252	0.17	+0.3
1,450,926	-		Shew_1252	0.18	-1.3
1,450,926	-		Shew_1252	0.18	+0.1
1,450,967	-		Shew_1252	0.24	+1.0
1,451,077	+		Shew_1252	0.40	-3.0
1,451,133	+		Shew_1252	0.49	-2.3
1,451,178	-		Shew_1252	0.56	-0.5
1,451,280	-		Shew_1252	0.71	+0.8
1,451,280	-		Shew_1252	0.71	-0.9
1,451,416	+				+0.3
1,451,416	+				+1.8
1,451,476	+				+0.6
1,451,532	+				-0.6
1,451,540	-				+0.8
1,451,559	-				+1.1
1,451,683	-		Shew_1253	0.17	+1.5
1,451,806	+		Shew_1253	0.33	+0.1
1,451,811	+		Shew_1253	0.34	-0.0
1,451,814	-		Shew_1253	0.35	+0.5
1,451,814	-		Shew_1253	0.35	+0.3
1,451,814	-		Shew_1253	0.35	+0.1
1,451,819	-		Shew_1253	0.35	+1.5
1,451,922	+		Shew_1253	0.49	+0.9
1,451,931	+		Shew_1253	0.51	-3.6
1,452,127	-		Shew_1253	0.78	+1.6
1,452,228	+				+0.1
1,452,228	+				+0.5
1,452,228	+				+0.7
1,452,310	+				+0.6
1,452,320	+				-0.3
1,452,333	+				+0.3
1,452,346	-				-0.1
1,452,536	+		Shew_1254	0.31	+0.1
1,452,794	+		Shew_1254	0.77	-0.1
1,452,804	+		Shew_1254	0.79	+0.1
1,452,804	+		Shew_1254	0.79	-1.3